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GS_00JYS5H.2
Version 2
GS_00JYS5H.1
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USA/GS_00JYS5H.2/2026-09-30
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
QB275536.1.seg1/QB275537.1.seg2/QB275538.1.seg3/QB275539.1.seg4/QB275540.1.seg5/QB275541.1.seg6/QB275542.1.seg7/QB275543.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-05 03:53:00 UTC
Date released
2026-11-05 03:54:06 UTC
INSDC
bioprojectAccession
PRJNA967387
biosampleAccession
SAMN64602717
INSDC accession seg1
QB275536.1
INSDC accession seg2
QB275537.1
INSDC accession seg3
QB275538.1
INSDC accession seg4
QB275539.1
INSDC accession seg5
QB275540.1
INSDC accession seg6
QB275541.1
INSDC accession seg7
QB275542.1
INSDC accession seg8
QB275543.1
NCBI release date
2026-11-02
SRA run accession
SRR41495999
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-09-30
Isolate name
A/California/LACPHL-INF02866/2026
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2278 (97.3%)
Total SNPs seg1
106
Length seg2
2256 (96.3%)
Total ambiguous nucs seg2
1
Total SNPs seg2
112
Length seg3
2151 (96.3%)
Total SNPs seg3
93
Length seg4
1701 (97.9%)
Total SNPs seg4
122
Length seg5
1491 (95.2%)
Total SNPs seg5
57
Length seg6
1410 (98%)
Total SNPs seg6
21
Length seg7
979 (95.3%)
Total SNPs seg7
29
Length seg8
827 (92.9%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
G
51
A
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
G
272
A
A
282
G
C
289
A
A
336
G
G
342
T
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
Show more
seg2
A
45
G
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
G
180
A
G
186
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
Show more
seg3
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
T
349
C
G
363
A
T
369
C
A
396
G
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
G
81
A
G
96
A
G
207
A
G
219
A
C
249
T
G
270
A
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
A
513
G
T
525
C
A
582
C
Show more
seg6
C
40
T
A
64
G
T
100
C
G
251
A
T
325
C
C
349
A
G
456
A
C
575
T
A
603
C
C
797
A
C
832
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
A
1167
C
G
1206
A
C
1249
A
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
T
316
C
G
343
A
A
448
G
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
G
616
A
A
637
G
A
658
G
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
G
430
A
A
442
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
A
82
T
NA:
R
150
H
NA:
K
199
T
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
K
387
T
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
K
PB1-F2:
S
23
N
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
S
82
N
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
T
184
S
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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