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GS_00JTR5U.2
Version 2
GS_00JTR5U.1
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GS_00JTR5U.2
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USA/GS_00JTR5U.2/2026-08-12
A. Hassan &
B. Cherrelle
NJDOH PHEL Virology Shared Submissions, Public Health and Environmental Laboratories, Virology
Submission details
Submission ID
QB154127.1.seg1/QB154128.1.seg2/QB154129.1.seg3/QB154130.1.seg4/QB154131.1.seg5/QB154132.1.seg6/QB154133.1.seg7/QB154134.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-20 23:10:32 UTC
Date released
2026-10-20 23:11:38 UTC
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-08-12
Isolate name
A/New Jersey/V26008993/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
QB154127.1
INSDC accession seg2
QB154128.1
INSDC accession seg3
QB154129.1
INSDC accession seg4
QB154130.1
INSDC accession seg5
QB154131.1
INSDC accession seg6
QB154132.1
INSDC accession seg7
QB154133.1
INSDC accession seg8
QB154134.1
NCBI release date
2026-10-09
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2280 (97.4%)
Total ambiguous nucs seg1
1
Total SNPs seg1
101
Length seg2
2274 (97.1%)
Total SNPs seg2
110
Length seg3
2151 (96.3%)
Total SNPs seg3
95
Length seg4
1701 (97.9%)
Total SNPs seg4
121
Length seg5
1497 (95.6%)
Total SNPs seg5
57
Length seg6
1410 (98%)
Total SNPs seg6
21
Length seg7
982 (95.6%)
Total SNPs seg7
28
Length seg8
838 (94.2%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
C
54
T
G
57
A
T
75
C
G
87
A
C
198
T
T
255
C
G
272
A
A
282
G
C
289
A
A
336
G
G
342
T
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
T
438
C
Show more
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
G
180
A
A
193
G
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
T
362
C
Show more
seg3
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
T
349
C
G
363
A
T
369
C
A
396
G
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
G
81
A
G
96
A
G
207
A
G
219
A
C
249
T
G
270
A
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
A
513
G
T
525
C
A
582
C
Show more
seg6
C
40
T
A
64
G
T
100
C
G
251
A
T
325
C
C
349
A
G
456
A
T
553
C
C
575
T
A
603
C
C
797
A
T
1015
C
A
1044
G
A
1079
G
A
1150
G
A
1160
G
G
1206
A
C
1249
A
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
T
316
C
G
343
A
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
G
616
A
A
637
G
A
658
G
G
680
A
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
G
430
A
A
442
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
A
82
T
NA:
R
150
H
NA:
K
199
T
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
L
403
I
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
T
57
A
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
K
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
S
82
N
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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