GS_00JA1ML.1

USA/GS_00JA1ML.1/2026-07-30
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ933926.1.seg4
Submitting group
Date submitted
2026-09-03 05:01:45 UTC
Date released
2026-09-03 05:03:56 UTC

INSDC

bioprojectAccession
INSDC accession seg4
NCBI release date
2026-09-02

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-07-30
Isolate name
B/California/GKISBBBK79644/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
59

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A417G
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A484G
  • C509T
  • T510C
Deletions

seg4

562-570
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154T
  • HA1:T182K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

HA2

  • HA2:D71N
Deletions

HA1

HA1:162-164
Insertions
N/A