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Influenza A/H1N1pdm
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GS_00GD2KK.2
Version 2
GS_00GD2KK.1
Previous version
GS_00GD2KK.2
Latest version
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USA/GS_00GD2KK.2/2025-11-06
A. P. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson,
A. M. Plocik &
D. Gratalo
Ginkgo Bioworks, Ginkgo Biosecurity
Submission details
Submission ID
PX641179.1.seg3/PX641175.1.seg4/PX641178.1.seg5/PX641177.1.seg6/PX641176.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-26 04:29:29 UTC
Date released
2026-03-26 04:32:01 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg3
PX641179.1
INSDC accession seg4
PX641175.1
INSDC accession seg5
PX641178.1
INSDC accession seg6
PX641177.1
INSDC accession seg7
PX641176.1
NCBI release date
2025-12-01
Clade
Clade HA
D.3.1
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
Florida
Collection date
2025-11-06
Isolate name
A/Florida/GKISBBBI20699/2025
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg3
2208 (100%)
Total inserted nucs seg3
57
Total SNPs seg3
82
Length seg4
1752 (100%)
Total SNPs seg4
106
Length seg5
1542 (100%)
Total inserted nucs seg5
45
Total SNPs seg5
62
Length seg6
1433 (100%)
Total SNPs seg6
22
Length seg7
1002 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
24
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg3
G
40
A
R
53
A
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
G
126
A
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
T
285
C
G
297
A
G
298
A
G
423
A
Show more
seg4
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
200
C
A
231
C
C
293
G
C
318
T
G
322
A
G
360
A
A
408
C
G
416
A
A
429
G
C
443
T
A
456
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
T
402
C
Show more
seg6
T
50
C
G
143
A
A
144
G
G
163
A
C
221
T
T
228
C
T
278
C
C
452
A
C
579
T
G
607
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
T
1016
C
C
1187
T
A
1193
G
Show more
seg7
G
75
A
C
124
A
G
238
A
G
258
A
A
293
G
G
339
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
G
600
A
C
622
A
G
660
A
T
663
C
G
687
A
A
689
G
Show more
Deletions
N/A
Insertions
seg3
ins_0:TACTGATCCAAA, ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA
seg5
ins_0:GGGTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATAC
seg7
ins_0:TAGATGTTTAAAG, ins_982:AAAACTA
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
43
N
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
I
46
V
NA:
S
52
N
NA:
S
74
P
NA:
S
200
N
NA:
I
264
T
NA:
I
396
M
NA:
V
453
M
NA:
K
469
N
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
N
377
S
NP:
V
425
I
NP:
S
498
N
PA
PA:
V
14
I
PA:
X
18
E
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
P
400
S
PA:
I
438
V
PA:
I
505
V
PA:
P
534
T
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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