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Influenza A/H1N1pdm
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GS_00G4PP8.2
Version 2
GS_00G4PP8.1
Previous version
GS_00G4PP8.2
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USA/GS_00G4PP8.2/2025-08-10
A. P. Rothstein,
S. Collins,
G. Muir,
A. Simas,
B. Lu,
B. Cosca,
B. Girinathan,
P. Leeson,
A. M. Plocik &
B. Simen
Ginkgo Bioworks, Ginkgo Biosecurity
Submission details
Submission ID
PX423057.1.seg3/PX423053.1.seg4/PX423056.1.seg5/PX423055.1.seg6/PX423054.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-26 04:29:29 UTC
Date released
2026-03-26 04:32:01 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg3
PX423057.1
INSDC accession seg4
PX423053.1
INSDC accession seg5
PX423056.1
INSDC accession seg6
PX423055.1
INSDC accession seg7
PX423054.1
NCBI release date
2025-09-26
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-08-10
Isolate name
A/New York/GKISBBBH32102/2025
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg3
2208 (100%)
Total inserted nucs seg3
57
Total SNPs seg3
74
Length seg4
1752 (100%)
Total SNPs seg4
111
Length seg5
1540 (100%)
Total inserted nucs seg5
43
Total SNPs seg5
61
Length seg6
1432 (100%)
Total deleted nucs seg6
1
Total SNPs seg6
18
Length seg7
1002 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
29
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg3
G
40
A
R
53
A
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
G
477
T
G
498
A
G
504
A
Show more
seg4
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
380
A
G
416
A
A
429
G
C
443
T
A
456
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
C
227
T
C
301
T
C
452
A
G
607
A
G
754
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
A
1049
G
C
1187
T
A
1193
G
A
1208
G
A
1304
G
G
1365
A
T
1403
C
G
1415
T
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
660
A
Show more
Deletions
seg6
1426
Insertions
seg3
ins_0:TACTGATCCAAA, ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA
seg5
ins_0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATAC
seg7
ins_0:TAGATGTTTAAAG, ins_982:AAAACTA
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
R
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
A
98
V
NA:
S
200
N
NA:
G
249
E
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
PA
PA:
V
14
I
PA:
X
18
E
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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