GS_00G4AV9.3

USA/GS_00G4AV9.3/2025-07-27
Direct Submission

Center for Research on Influenza Pathogenesis (CRIP), CEIRS Data Processing and Coordinating Center

Submission details

Submission ID
PX400050.1.seg1/PX468500.1.seg2/PX400051.1.seg3/PX400048.1.seg4/PX400049.1.seg5/PX400052.1.seg6/PX400053.1.seg7/PX400047.1.seg8
Submitting group
Date submitted
2026-01-19 09:53:38 UTC
Date released
2026-01-19 23:09:32 UTC

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2025-10-21

Clade

Clade HA
D.3.1
Clade NA
D

Sample details

Collection country
USA
Collection date
2025-07-27
Isolate name
A/New York City/PX22738/2025

Host

Host

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2341 (100%)
Total inserted nucs seg1
61
Total SNPs seg1
88
Length seg2
2341 (100%)
Total inserted nucs seg2
67
Total SNPs seg2
73
Length seg3
2233 (100%)
Total inserted nucs seg3
82
Total SNPs seg3
85
Length seg4
1777 (100%)
Total inserted nucs seg4
25
Total SNPs seg4
112
Length seg5
1565 (100%)
Total inserted nucs seg5
68
Total SNPs seg5
55
Length seg6
1458 (100%)
Total inserted nucs seg6
25
Total SNPs seg6
22
Length seg7
1027 (100%)
Total inserted nucs seg7
45
Total SNPs seg7
24
Length seg8
890 (100%)
Total inserted nucs seg8
27
Total SNPs seg8
33

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • A18G
  • T63C
  • A90C
  • A96G
  • A108G
  • A132G
  • A138G
  • G161A
  • A174G
  • G198A
  • T201C
  • A225G
  • C242T
  • A243G
  • C285A
  • A291G
  • G375A
  • A441G

seg2

  • G42A
  • A63G
  • A159G
  • G168A
  • G180A
  • C192A
  • G204A
  • T207A
  • T210C
  • T222C
  • G225A
  • C297T
  • G312A
  • A345G
  • A366G
  • T384C
  • C447T
  • T450C

seg3

  • G40A
  • R53A
  • T81C
  • G84C
  • A88G
  • C90T
  • C99T
  • A114T
  • C153T
  • C162T
  • C165T
  • G187A
  • G204A
  • G298A
  • G423A
  • C468T
  • G477A
  • G498A

seg4

  • A38G
  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • C192T
  • A194G
  • A231C
  • C281A
  • C293G
  • C318T
  • G322A
  • G360A
  • G380A
  • G409A

seg5

  • G42T
  • C87T
  • A97G
  • C141A
  • C171T
  • T177C
  • C180T
  • C249A
  • A288C
  • G298A
  • G309A
  • T314C
  • G315A
  • R341A
  • T365A
  • A390G
  • T402C
  • A406C

seg6

  • C285T
  • T413C
  • C452A
  • G607A
  • G659A
  • A686T
  • C728A
  • A785G
  • T799C
  • A818G
  • C893T
  • C902G
  • G914T
  • C929T
  • G950A
  • T1016C
  • A1049G
  • C1187T

seg7

  • G75A
  • C124A
  • G238A
  • G258A
  • A293G
  • G306A
  • G339A
  • G342A
  • C375A
  • C390T
  • T432C
  • G441T
  • G492A
  • C507A
  • C622A
  • G660A
  • G687A
  • A689G

seg8

  • C6A
  • C42T
  • C54T
  • T99C
  • C108A
  • T159C
  • G163A
  • C192T
  • C204T
  • A238G
  • G250A
  • C264T
  • C268A
  • C315T
  • A367G
  • A375T
  • A391G
  • G396A
Deletions
N/A
Insertions

seg1

ins_0:AGCAAAAGCAGGTCAAATATATTCAAT, ins_2280:TGTCGAATTGTTTAAAAACGACCTTGTTTCTACT

seg2

ins_0:AGCAAAAGCAGGCAAACCATTTGA, ins_2274:TGAATTTAACTTGTCCTTCATGAAAAAATGCCTTGTTTCTACT

seg3

ins_0:AGCAAAAGCAGGTACTGATCCAAA, ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTACCTTGTTTCTACT

seg4

ins_0:AGCAAAAGCAGG, ins_1752:CCTTGTTTCTACT

seg5

ins_0:AGCAAAAGCAGGGTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATACCCTTGTTTCTACT

seg6

ins_0:AGCAAAAGCAGG, ins_1433:CCTTGTTTCTACT

seg7

ins_0:AGCAAAAGCAGGTAGATGTTTAAAG, ins_982:AAAACTACCTTGTTTCTACT

seg8

ins_0:AGCAAAAGCAGGGTGACAAAAACATA, ins_863:T

Amino acid mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139D
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:Q208K
  • M1:K230R

M2

  • M2:D21G
  • M2:S23N

NA

  • NA:P93S
  • NA:S200N
  • NA:I264T
  • NA:M314I
  • NA:V453M
  • NA:K469N

NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I
  • NP:S498N

NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:P164S
  • NS1:N205S

PA

  • PA:V14I
  • PA:X18E
  • PA:I30V
  • PA:V63I
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V

PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

PB1

  • PB1:G154D
  • PB1:V200I
  • PB1:K386R
  • PB1:I397M
  • PB1:I435T
  • PB1:K757R

PB2

  • PB2:R54K
  • PB2:M66I
  • PB2:T81M
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:M473V
  • PB2:L475M
  • PB2:S590N
  • PB2:V667I
  • PB2:V731I

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A