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GS_00FV0QD.3
Version 3
GS_00FV0QD.1
Previous version
GS_00FV0QD.2
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GS_00FV0QD.3
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USA/GS_00FV0QD.3/2025-07-24
A. S. Lauring &
L. K. Papalambros
Lauring Lab at University of Michigan, Department of Microbiology and Immunology
Submission details
Submission ID
PX253267.1.seg1/PX253269.1.seg2/PX253270.1.seg3/PX253271.1.seg4/PX253274.1.seg5/PX253268.1.seg6/PX253272.1.seg7/PX253273.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-19 09:53:38 UTC
Date released
2026-01-19 23:09:32 UTC
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
Michigan
Collection date
2025-07-24
Isolate name
A/Michigan/UM-10065386503/2025
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PX253267.1
INSDC accession seg2
PX253269.1
INSDC accession seg3
PX253270.1
INSDC accession seg4
PX253271.1
INSDC accession seg5
PX253274.1
INSDC accession seg6
PX253268.1
INSDC accession seg7
PX253272.1
INSDC accession seg8
PX253273.1
NCBI release date
2025-09-02
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
86
Length seg2
2274 (100%)
Total SNPs seg2
73
Length seg3
2151 (100%)
Total SNPs seg3
78
Length seg4
1701 (97.1%)
Total SNPs seg4
108
Length seg5
1497 (100%)
Total SNPs seg5
60
Length seg6
1410 (98.4%)
Total SNPs seg6
20
Length seg7
982 (100%)
Total SNPs seg7
29
Length seg8
838 (97.1%)
Total SNPs seg8
35
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
G
39
T
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
Show more
seg2
G
42
A
A
159
G
G
168
A
G
180
A
C
192
T
C
198
T
C
201
T
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
T
324
A
G
354
A
A
366
G
C
447
T
T
450
C
Show more
seg3
G
40
A
R
53
A
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
A
289
G
G
298
A
G
423
A
C
441
T
G
477
A
Show more
seg4
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
A
260
G
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
416
A
A
429
G
C
443
T
A
456
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
C
301
T
C
452
A
T
506
C
G
607
A
A
785
G
T
799
C
A
818
G
T
851
C
C
893
T
G
914
T
G
1025
A
A
1049
G
A
1083
T
C
1187
T
A
1193
G
A
1208
G
A
1304
G
G
1365
A
T
1403
C
G
1415
T
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
660
A
Show more
seg8
C
6
A
C
42
T
C
54
T
G
60
A
T
99
C
C
108
A
G
123
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
G
330
A
A
367
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
I
359
L
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
V
14
I
PA:
X
18
E
PA:
I
30
V
PA:
V
63
I
PA:
T
97
A
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
T
97
A
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
T
228
I
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
D
729
E
PB1:
K
757
R
PB2
PB2:
Q
13
H
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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