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GS_00EZ5GJ.2
Version 2
GS_00EZ5GJ.1
Previous version
GS_00EZ5GJ.2
Latest version
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Download FASTA
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Display Name: Brazil/GS_00EZ5GJ.2/2025-06-20
J. Araujo,
L. M. Thomazelli,
T. Fabrizio,
G. O. Fenner,
E. G. Dorlass,
A. K. A. Eisen,
M. S. Nardi,
C. Aires,
M. G. L. Barboza,
R. J. Webby &
E. L. Durigon
Submission details
Submission ID
PX062323.1.seg1/PX062324.1.seg2/PX062325.1.seg3/PX062326.1.seg4/PX062327.1.seg5/PX062328.1.seg6/PX062329.1.seg7/PX062330.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-13 13:48:10 UTC
Date released
2025-08-13 23:33:26 UTC
Authors
Author affiliations
Universidade de Sao Paulo, Laboratorio de virologia Clinica e Molecular
Clade
Clade
2.3.4.4b
Alignment states and QC metrics seg1
Completeness seg1
98.93%
Length seg1
2316
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
0
Total SNPs seg1
383
Total unknown nucs seg1
0
Alignment states and QC metrics seg2
Completeness seg2
100.00%
Length seg2
2341
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
267
Total unknown nucs seg2
0
Alignment states and QC metrics seg3
Completeness seg3
100.00%
Length seg3
2233
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
0
Total SNPs seg3
164
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
99.72%
Length seg4
1762
Total ambiguous nucs seg4
0
Total deleted nucs seg4
3
Total frame shifts seg4
0
Total inserted nucs seg4
10
Total SNPs seg4
194
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
96.93%
Length seg5
1517
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
202
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
99.66%
Length seg6
1454
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
1
Total SNPs seg6
151
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1027
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
71
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
100.00%
Frame shifts seg8
NS1:23-26(nt:80-92)
Length seg8
890
Total ambiguous nucs seg8
0
Total deleted nucs seg8
2
Total frame shifts seg8
1
Total inserted nucs seg8
27
Total SNPs seg8
239
Total unknown nucs seg8
0
Sample details
Collection country
Brazil
Collection subdivision level 1
Sao Paulo,Ibirapuera Central Park
Collection date
2025-06-20
Isolate name
A/Irere/Ibirapuera Central Park/CUT37/2025
INSDC
INSDC accession seg1
PX062323.1
INSDC accession seg2
PX062324.1
INSDC accession seg3
PX062325.1
INSDC accession seg4
PX062326.1
INSDC accession seg5
PX062327.1
INSDC accession seg6
PX062328.1
INSDC accession seg7
PX062329.1
INSDC accession seg8
PX062330.1
NCBI release date
2025-08-03
INSDC seg4
Subtype seg4
H5
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
seg1:
T
17
A
seg1:
A
33
G
seg1:
A
41
G
seg1:
G
63
A
seg1:
C
69
T
seg1:
A
90
C
seg1:
G
102
A
seg1:
T
105
C
seg1:
T
108
C
seg1:
C
114
A
seg1:
A
138
G
seg1:
A
139
C
seg1:
T
156
A
seg1:
T
159
A
seg1:
A
165
G
seg1:
C
198
T
seg1:
C
207
T
seg1:
G
210
A
Show more
seg2
seg2:
T
36
C
seg2:
A
54
G
seg2:
G
60
T
seg2:
T
75
C
seg2:
T
81
C
seg2:
T
93
G
seg2:
T
112
C
seg2:
A
135
G
seg2:
C
138
T
seg2:
A
150
G
seg2:
C
153
T
seg2:
G
180
A
seg2:
G
195
A
seg2:
A
199
T
seg2:
G
204
A
seg2:
C
216
T
seg2:
G
228
A
seg2:
C
241
T
Show more
seg3
seg3:
C
20
T
seg3:
A
61
G
seg3:
G
81
A
seg3:
A
117
G
seg3:
G
120
A
seg3:
G
144
A
seg3:
A
171
G
seg3:
C
180
T
seg3:
T
189
C
seg3:
G
195
A
seg3:
C
206
T
seg3:
A
207
G
seg3:
A
211
G
seg3:
C
228
A
seg3:
G
249
A
seg3:
A
255
G
seg3:
G
270
A
seg3:
A
277
G
Show more
seg4
seg4:
A
9
T
seg4:
T
10
C
seg4:
A
12
C
seg4:
A
30
C
seg4:
G
36
A
seg4:
T
39
A
seg4:
C
54
T
seg4:
T
57
C
seg4:
C
63
T
seg4:
G
114
A
seg4:
A
123
G
seg4:
T
141
C
seg4:
C
157
A
seg4:
G
174
A
seg4:
T
183
C
seg4:
C
192
A
seg4:
T
198
C
seg4:
A
207
G
Show more
seg5
seg5:
T
29
C
seg5:
C
39
T
seg5:
C
42
A
seg5:
G
57
A
seg5:
G
81
A
seg5:
G
117
A
seg5:
T
129
A
seg5:
A
135
G
seg5:
A
138
G
seg5:
T
153
C
seg5:
G
159
A
seg5:
T
162
C
seg5:
T
165
C
seg5:
C
177
T
seg5:
A
189
G
seg5:
C
195
T
seg5:
C
198
T
seg5:
T
199
A
Show more
seg6
seg6:
A
15
T
seg6:
T
17
C
seg6:
G
35
A
seg6:
T
43
C
seg6:
G
69
A
seg6:
A
78
G
seg6:
T
80
C
seg6:
T
90
C
seg6:
A
92
G
seg6:
C
122
T
seg6:
T
125
C
seg6:
T
134
C
seg6:
G
137
A
seg6:
C
150
T
seg6:
A
155
G
seg6:
G
156
C
seg6:
C
167
T
seg6:
T
179
C
Show more
seg7
seg7:
A
25
G
seg7:
C
46
A
seg7:
G
68
A
seg7:
A
76
G
seg7:
G
112
A
seg7:
A
127
G
seg7:
A
134
G
seg7:
C
142
T
seg7:
A
196
G
seg7:
A
205
G
seg7:
G
268
A
seg7:
A
270
G
seg7:
T
275
C
seg7:
A
279
G
seg7:
A
285
C
seg7:
T
292
C
seg7:
T
301
C
seg7:
T
307
C
Show more
seg8
seg8:
G
9
A
seg8:
G
29
T
seg8:
A
30
G
seg8:
A
32
G
seg8:
A
33
T
seg8:
C
35
A
seg8:
T
36
A
seg8:
C
37
G
seg8:
G
38
C
seg8:
T
50
C
seg8:
T
53
C
seg8:
A
55
T
seg8:
A
59
T
seg8:
A
66
G
seg8:
A
68
C
seg8:
A
69
C
seg8:
A
71
C
seg8:
G
74
A
Show more
Deletions
seg4:1054-1056, seg8:90, seg8:93
Insertions
ins_seg8:865:CCTTGTTTCTACT, ins_seg8:0:AGCAAAAGCAGG, ins_seg8:79:TG, ins_seg6:1443:A, ins_seg4:1760:CTTGTTTCTA
Amino acid mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
K
3
N
HA:
Q
46
K
HA:
R
69
K
HA:
D
70
N
HA:
N
88
R
HA:
K
98
R
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
D
113
E
HA:
L
120
M
HA:
T
124
I
HA:
S
139
P
HA:
N
140
D
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
Show more
M1
M1:
V
15
I
M1:
T
37
A
M1:
N
82
S
M1:
N
85
S
M1:
N
87
T
M1:
K
101
R
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
A
200
V
M1:
A
227
T
M1:
K
230
R
M1:
N
232
D
M1:
M
248
L
M2
M2:
E
14
G
M2:
K
18
N
M2:
V
28
I
M2:
I
51
V
M2:
R
61
G
M2:
D
88
N
M2:
G
89
D
NA
NA:
I
8
T
NA:
V
17
I
NA:
I
20
V
NA:
H
44
Y
NA:
A
46
P
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
T
NA:
S
95
N
NA:
V
99
I
NA:
H
100
Y
NA:
H
155
Y
NA:
R
173
K
NA:
T
188
I
NA:
M
258
I
NA:
L
269
M
NA:
A
285
S
NA:
E
287
D
Show more
NP
NP:
Y
52
N
NP:
D
101
E
NP:
E
115
D
NP:
M
136
L
NP:
E
292
G
NP:
N
309
S
NP:
V
312
I
NP:
N
319
K
NP:
V
329
I
NP:
A
353
F
NP:
S
359
A
NP:
V
363
I
NP:
D
375
E
NP:
T
378
A
NP:
R
384
K
NP:
S
450
N
NP:
S
451
A
NS1
NS1:
I
6
V
NS1:
T
7
S
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
C
28
G
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
L
54
I
NS1:
R
55
E
NS1:
V
56
T
NS1:
M
59
R
NS1:
E
60
A
NS1:
K
63
Q
NS1:
D
67
R
NS1:
K
70
E
Show more
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
G
NS2:
T
64
K
NS2:
N
67
G
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
NS2:
I
86
R
Show more
PA
PA:
I
13
V
PA:
T
61
M
PA:
I
63
V
PA:
T
85
A
PA:
K
113
R
PA:
T
129
I
PA:
V
201
I
PA:
C
212
R
PA:
K
228
N
PA:
S
277
P
PA:
R
361
K
PA:
K
399
E
PA:
P
400
S
PA:
M
441
V
PA:
L
504
I
PA:
R
536
K
PA:
R
544
E
PA:
E
553
A
Show more
PAX
PAX:
I
13
V
PAX:
T
61
M
PAX:
I
63
V
PAX:
T
85
A
PAX:
K
113
R
PAX:
T
129
I
PAX:
S
193
N
PAX:
G
209
E
PAX:
L
210
P
PAX:
S
219
F
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
250
Q
PAX:
K
252
R
PB1
PB1:
Y
30
H
PB1:
T
59
S
PB1:
F
94
S
PB1:
E
104
G
PB1:
V
114
I
PB1:
K
134
N
PB1:
N
158
S
PB1:
G
177
E
PB1:
I
182
T
PB1:
R
211
K
PB1:
K
360
E
PB1:
K
391
R
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
I
517
V
PB1:
M
535
I
PB1:
D
536
N
Show more
PB2
PB2:
K
5
R
PB2:
M
64
L
PB2:
T
105
K
PB2:
I
147
T
PB2:
L
154
I
PB2:
K
197
R
PB2:
R
251
K
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
R
PB2:
R
389
S
PB2:
I
451
T
PB2:
S
470
N
PB2:
A
471
T
PB2:
V
478
I
PB2:
V
495
I
PB2:
V
511
I
PB2:
V
560
I
Show more
Deletions
HA:344, NS1:27
Insertions
None
Load sequences