GenSpectrum
Influenza A/H1N1pdm
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_00DDLL2.2
Version 2
GS_00DDLL2.1
Previous version
GS_00DDLL2.2
Latest version
All versions
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00DDLL2.2/2025-04-03
USDA Swine Surveillance,
A.; Lin,
K.; Dohrn,
C.
Submission details
Submission ID
PV579095.1.seg4/PV579096.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-03 00:18:34 UTC
Date released
2025-05-03 00:18:51 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade HA
1
Alignment states and QC metrics seg4
Completeness seg4
97.09%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
169
Total unknown nucs seg4
0
Sample details
Collection country
USA
Collection subdivision level 1
Missouri
Collection date
2025-04-03
Isolate name
A/swine/Missouri/A02858510/2025
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV579095.1
INSDC accession seg6
PV579096.1
NCBI release date
2025-04-29
Alignment states and QC metrics seg6
Length seg6
1410
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
seg4:
T
41
C
seg4:
A
49
G
seg4:
A
53
T
seg4:
C
61
A
seg4:
C
62
A
seg4:
C
64
T
seg4:
A
71
C
seg4:
A
86
C
seg4:
T
95
C
seg4:
G
98
A
seg4:
A
110
T
seg4:
T
158
C
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
174
A
seg4:
A
178
G
seg4:
C
185
T
seg4:
C
215
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
D
35
N
HA1:
K
36
R
HA1:
I
61
L
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
K
HA1:
D
86
E
HA1:
D
97
N
HA1:
S
128
T
HA1:
A
141
T
HA1:
K
142
N
HA1:
K
146
R
HA1:
I
149
V
HA1:
K
153
Q
HA1:
L
161
I
HA1:
S
162
N
HA1:
G
170
E
HA1:
K
171
R
Show more
HA2
HA2:
V
18
I
HA2:
E
47
G
HA2:
N
71
S
HA2:
K
75
R
HA2:
N
146
D
HA2:
T
147
M
HA2:
V
152
I
HA2:
A
166
S
HA2:
I
183
V
HA2:
V
200
I
SigPep
SigPep:
Y
10
C
SigPep:
T
14
K
SigPep:
A
15
V
Deletions
None
Insertions
None
Load sequences