GS_00AWWTE.1

Display Name: USA/GS_00AWWTE.1/2024-11-28
Fox, E. B.; Garrigues, J. M.; Green, N. M.

Submission details

Submission ID
PQ891715.1.seg4/PQ891718.1.seg5/PQ891717.1.seg6/PQ891716.1.seg7/PQ891719.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 14:24:59 UTC
Date released
2025-03-05 16:37:18 UTC

Authors

Author affiliations
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2024-11-28
Isolate name
LACPHL-INF00941

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg4
PQ891715.1
INSDC accession seg5
PQ891718.1
INSDC accession seg6
PQ891717.1
INSDC accession seg7
PQ891716.1
INSDC accession seg8
PQ891719.1
NCBI release date
2025-01-16

Alignment states and QC metrics seg4

Length seg4
1701

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1393

Alignment states and QC metrics seg7

Length seg7
982

Alignment states and QC metrics seg8

Length seg8
863

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Clade

HA subtype
H3
NA subtype
N2

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None