GS_00AWFCS.1

Display Name: Bangladesh/GS_00AWFCS.1/2022-11-27
Coggon, A.; Linton-Jenkins, J.; Nath, L. K.; Bryne, A.; Barua, H.; James, J.; Hoque, M. A.; Fournie, G.; Banyard, A.; Biswas, P.; Lewis, N.

Submission details

Submission ID
PV209763.1.seg2/PV209761.1.seg3/PV209764.1.seg4/PV209759.1.seg5/PV209760.1.seg6/PV209762.1.seg7/PV209765.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 14:24:59 UTC
Date released
2025-03-05 16:36:35 UTC

Authors

Author affiliations
University of Pennsylvania Center of Excellence for Influenza Research and Response (CEIRR), CEIRR Influenza Data Processing and Communication Center

INSDC

Bioproject accession
PRJNA818277
INSDC accession seg2
PV209763.1
INSDC accession seg3
PV209761.1
INSDC accession seg4
PV209764.1
INSDC accession seg5
PV209759.1
INSDC accession seg6
PV209760.1
INSDC accession seg7
PV209762.1
INSDC accession seg8
PV209765.1
NCBI release date
2025-03-03

Sample details

Collection country
Bangladesh
Collection date
2022-11-27

Host

Host name scientific
Gallus gallus
Host taxon id
9031

Alignment states and QC metrics seg2

Length seg2
2301

Alignment states and QC metrics seg3

Length seg3
2196

Alignment states and QC metrics seg4

Length seg4
1679

Alignment states and QC metrics seg5

Length seg5
1497

Alignment states and QC metrics seg6

Length seg6
1422

Alignment states and QC metrics seg7

Length seg7
987

Alignment states and QC metrics seg8

Length seg8
840

INSDC seg4

Subtype seg4
H9

INSDC seg6

Subtype seg6
N2

Clade

HA subtype
H9
NA subtype
N2

Nucleotide mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the NC_007357.1, NC_007358.1, NC_007359.1, NC_007362.1, NC_007360.1, NC_007361.1, NC_007363.1 & NC_007364.1 references

Substitutions
Deletions
None
Insertions
None