GS_001HHM6.1

Display Name: GS_001HHM6.1/2024-08-17
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788245.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910128
INSDC accession
PQ788245.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780884

Alignment states and QC metrics

Completeness
94.26%
Length
14859
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
195
Total unknown nucs
507

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-08-17
Isolate name
MN-MDH-RSVA-01074

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.2.1

Nucleotide mutations

Substitutions

  • A488G
  • C594A
  • T754A
  • G1050A
  • G1074A
  • A1314G
  • T1359C
  • T1413C
  • A1539G
  • C1788T
  • C1806T
  • T1911A
  • A1944G
  • G1968A
  • C2067T
  • T2165C
  • T2250C
  • C2368T
    • Deletions
    4174, 4592
    Insertions
    ins_7586:AC

    Amino acid mutations

    Substitutions

    G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T137A
  • G:L142S
  • G:R151H
  • G:G224E
  • G:K233N
  • G:K240R
  • G:S243I
  • G:I265L
  • G:P274L
  • G:Y280H
  • G:D284G
  • G:E287D
  • G:S294P
  • G:Y297H

    • L

  • L:I59V
  • L:P171L
  • L:K175R
  • L:R256K
  • L:L1438Q
  • L:K1589R
  • L:S1593N
  • L:H1599R
  • L:N1723S
  • L:G1731D

    • M

  • M:M254I

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T69A
    • Deletions
    None
    Insertions
    None