GS_001HHKA.1

Display Name: GS_001HHKA.1/2024-10-27
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788243.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910130
INSDC accession
PQ788243.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31781014

Alignment states and QC metrics

Completeness
91.63%
Length
15048
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
205
Total unknown nucs
1097

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-10-27
Isolate name
MN-MDH-RSVA-01076

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Substitutions

  • C90T
  • T106A
  • C183T
  • T372C
  • C379T
  • G587T
  • G1034A
  • G1050A
  • G1077A
  • A1082G
  • A1197T
  • C1344T
  • T1359C
  • T1413A
  • T1422C
  • A1434G
  • T1767C
  • C1788T
    • Deletions
    None
    Insertions
    ins_3154:A

    Amino acid mutations

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:T210A
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L
  • G:D284G
  • G:P298L

    • L

  • L:L48V
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • N

  • N:V352A

    • NS1

  • NS1:L13M

    • P

  • P:T92M
    • Deletions
    None
    Insertions
    None