GS_001HHCR.1

Display Name: GS_001HHCR.1/2024-11-08
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788236.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910137
INSDC accession
PQ788236.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780921

Alignment states and QC metrics

Completeness
93.87%
Length
15046
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
231
Total unknown nucs
755

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-08
Isolate name
MN-MDH-RSVA-01083

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3.1

Nucleotide mutations

Substitutions

  • C90T
  • A138G
  • C183T
  • T263C
  • A505G
  • G587T
  • C691T
  • G1034A
  • G1050A
  • T1055C
  • G1077A
  • A1124G
  • T1312C
  • T1326C
  • T1359C
  • G1368A
  • G1383A
  • T1413G
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:L20F
  • F:S276N
  • F:I291T

    • G

  • G:P71L
  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:I141L
  • G:R151N
  • G:N178G
  • G:G224E
  • G:V225A
  • G:L226P
  • G:P230T
  • G:S243I
  • G:S250F
  • G:H258Q
  • G:K262E
  • G:E263K

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:D1979E

    • M

  • M:K101R

    • N

  • N:K5R
  • N:V352A

    • NS1

  • NS1:I65T

    • P

  • P:T92M

    • SH

  • SH:Y47C
    • Deletions
    None
    Insertions
    None