GS_001HGZH.1

Display Name: GS_001HGZH.1/2024-11-17
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788223.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910150
INSDC accession
PQ788223.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780970

Alignment states and QC metrics

Completeness
95.61%
Length
14855
Total ambiguous nucs
1
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
224
Total unknown nucs
301

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-17
Isolate name
MN-MDH-RSVA-01096

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • C90T
  • A135T
  • C183T
  • A213G
  • T246C
  • C408T
  • T697C
  • T922C
  • A940C
  • T1004C
  • A1009G
  • A1021G
  • T1028C
  • G1034A
  • G1050A
  • A1051C
  • T1070A
  • G1077A
    • Deletions
    4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:A103T
  • F:T122A

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:Q140R
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:S283P
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:V1472I
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:T1942I
  • L:V1943D

    • M

  • M:M73L

    • N

  • N:I104V
  • N:V352A

    • P

  • P:L55P
  • P:T69I
    • Deletions
    None
    Insertions
    None