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GS_001HGSX.1
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Display Name: GS_001HGSX.1/2024-11-19
Kunerth,
H.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PQ788216.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-29 03:43
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910157
INSDC accession
PQ788216.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780963
Alignment states and QC metrics
Completeness
90.65%
Length
15047
Total ambiguous nucs
3
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
217
Total unknown nucs
1243
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-19
Isolate name
MN-MDH-RSVA-01103
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1
Nucleotide mutations
Substitutions
C
90
T
T
142
C
C
183
T
G
198
A
T
210
C
A
291
G
A
399
G
T
501
C
C
528
A
G
551
A
G
555
A
T
659
C
G
664
A
T
697
C
T
922
C
C
952
T
G
1000
A
C
1012
T
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Deletions
4592
Insertions
ins_1109:A
Amino acid mutations
Substitutions
F
F:
S
377
N
G
G:
P
71
L
G:
H
90
Y
G:
I
99
V
G:
L
101
F
G:
T
130
A
G:
I
134
K
G:
N
135
S
G:
L
142
S
G:
P
222
L
G:
G
224
E
G:
S
243
I
G:
G
254
E
G:
K
262
E
G:
I
265
L
G:
Y
273
H
G:
D
284
G
G:
Y
304
H
G:
L
310
P
G:
L
314
P
G:
T
320
A
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
R
1764
K
L:
S
1789
F
L:
Y
2163
N
M
M:
M
43
I
N
N:
V
352
A
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
None
Insertions
None
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