GS_001HGRZ.1

Display Name: GS_001HGRZ.1/2024-11-13
Kunerth, H.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ788215.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:43:01 UTC
Date released
2024-12-29 03:43:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:43insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910158
INSDC accession
PQ788215.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780962

Alignment states and QC metrics

Completeness
94.65%
Length
15045
Total ambiguous nucs
3
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
206
Total unknown nucs
634

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-13
Isolate name
MN-MDH-RSVA-01104

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1.5

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • G198A
  • A321G
  • A351G
  • G551A
  • C622T
  • A641G
  • G664A
  • T697C
  • A748G
  • T928C
  • G1000A
  • C1012T
  • T1048C
  • G1050A
  • A1090G
  • T1224C
    • Deletions
    4592, 7555
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:V127I
  • F:L129S

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:E295K
  • G:Y304H
  • G:T319I
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:A173T
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:V1617L
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:M43I

    • N

  • N:V352A

    • NS2

  • NS2:I15V

    • P

  • P:I24L
  • P:L55P
    • Deletions
    None
    Insertions
    None