GS_001HFLA.1

Display Name: GS_001HFLA.1/2024-10-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ798807.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:38:41 UTC
Date released
2024-12-29 03:39:04 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:38insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910197
INSDC accession
PQ798807.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780887

Alignment states and QC metrics

Completeness
98.42%
Length
15140
Total ambiguous nucs
13
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
116
Total unknown nucs
143

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-10-12
Isolate name
MN-MDH-RSVB-01143

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • A49T
  • G513T
  • G579A
  • T660C
  • C998A
  • G1385A
  • C1657T
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • A2841G
  • A2853G
  • A2856G
  • A2919G
  • G3036C
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:R1759K
  • L:L2162F

    • N

  • N:V97I

    • NS2

  • NS2:I26T
    • Deletions
    None
    Insertions
    None