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Influenza A/H5N1
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GS_001HE2E.1
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Display Name: GS_001HE2E.1/2024-11-20
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PQ798755.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:38:41 UTC
Date released
2024-12-29 03:39:04 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-29 03:38
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910249
INSDC accession
PQ798755.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780950
Alignment states and QC metrics
Completeness
98.65%
Length
15139
Total ambiguous nucs
2
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
3
Total SNPs
138
Total unknown nucs
119
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-20
Isolate name
MN-MDH-RSVB-01195
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
G
513
T
C
578
T
G
579
A
C
984
T
C
998
A
C
1204
T
G
1385
A
G
1732
A
T
1846
C
C
2074
T
C
2198
T
C
2553
T
C
2554
T
C
2691
T
G
3036
C
G
3050
A
C
3051
T
A
3060
G
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Deletions
973, 4586
Insertions
ins_3112:C, ins_15092:AT
Amino acid mutations
Substitutions
F
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
H
112
Y
G:
T
131
A
G:
I
137
T
G:
K
191
N
G:
P
214
S
G:
P
221
L
G:
T
225
P
G:
V
249
A
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
Y
125
H
L:
N
176
S
L:
S
560
P
L:
K
570
R
L:
V
1721
I
L:
R
1759
K
L:
I
1832
V
L:
T
1987
I
L:
D
2048
N
N
N:
V
97
I
Deletions
None
Insertions
None
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