GS_001HDMA.1

Display Name: GS_001HDMA.1/2024-11-24
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PQ798740.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-29 03:38:41 UTC
Date released
2024-12-29 03:39:04 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-29 03:38insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN45910264
INSDC accession
PQ798740.1
NCBI release date
2024-12-28
NCBI update date
2024-12-28
SRA run accession
SRR31780933

Alignment states and QC metrics

Completeness
96.91%
Length
15141
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
132
Total unknown nucs
386

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-11-24
Isolate name
MN-MDH-RSVB-01210

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Substitutions

  • A131G
  • G513T
  • G547A
  • G579A
  • A590G
  • C666T
  • C739T
  • G1385A
  • A1462G
  • T1555C
  • G1732A
  • T1846C
  • T1882C
  • G2029A
  • C2074T
  • T2113C
  • C2198T
  • A2503G
    • Deletions
    973
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:I5F
  • F:L13I
  • F:V103A
  • F:S190N
  • F:S211N

    • G

  • G:A74V
  • G:R98K
  • G:S100G
  • G:P214S
  • G:P221L
  • G:P229L
  • G:T248I
  • G:H257Y

    • L

  • L:S169P
  • L:K260R
  • L:I445V
  • L:K570R
  • L:K1704N
  • L:R1759K
  • L:I1834V
  • L:F1982L
  • L:T1987I

    • M

  • M:T89I

    • N

  • N:V97I

    • NS2

  • NS2:T3A
  • NS2:T28I

    • P

  • P:S67G
  • P:D229G
    • Deletions
    None
    Insertions
    None