GS_001HDCV.1

Display Name: USA/GS_001HDCV.1/2016-02-25
Jernigan, D.; Wentworth, D.; Katz, J.; Barnes, J.; Garten, R.; Xu, X.

Submission details

Submission ID
KX612529.1.seg1/KX612530.1.seg2/KX612531.1.seg3/KX612532.1.seg4/KX612533.1.seg5/KX612534.1.seg6/KX612535.1.seg7/KX612536.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 13:00:57 UTC
Date released
2025-03-05 13:05:45 UTC

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

Sample details

Collection country
USA
Collection date
2016-02-25
Isolate name
EPI_ISL_217800

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
KX612529.1
INSDC accession seg2
KX612530.1
INSDC accession seg3
KX612531.1
INSDC accession seg4
KX612532.1
INSDC accession seg5
KX612533.1
INSDC accession seg6
KX612534.1
INSDC accession seg7
KX612535.1
INSDC accession seg8
KX612536.1
NCBI release date
2016-08-03

Alignment states and QC metrics seg1

Length seg1
2340

Alignment states and QC metrics seg2

Length seg2
2367

Alignment states and QC metrics seg3

Length seg3
2276

Alignment states and QC metrics seg4

Length seg4
1856

Alignment states and QC metrics seg5

Length seg5
1815

Alignment states and QC metrics seg6

Length seg6
1528

Alignment states and QC metrics seg7

Length seg7
1154

Alignment states and QC metrics seg8

Length seg8
1066

INSDC seg4

Lineage seg4
vic

Clade

Lineage ha
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None