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GS_001H3KQ.1
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Display Name: GS_001H3KQ.1/2024-03-26
Fourati,
S.; Rameix Welti,
M.-A.
Submission details
Submission ID
PQ763015.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-19 05:37:52 UTC
Date released
2024-12-19 05:39:05 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-19 05:37
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Hospital Henri Mondor - APHP, Department of Virology
Alignment states and QC metrics
Completeness
99.99%
Length
15276
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
52
Total SNPs
226
Total unknown nucs
1
Sample details
Collection country
France
Collection date
2024-03-26
Isolate name
040-0044
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ763015.1
NCBI release date
2024-12-18
NCBI update date
2024-12-18
Clade & Lineage
Lineage
A.D.1
Nucleotide mutations
Substitutions
T
59
A
T
66
A
A
67
G
C
90
T
C
183
T
G
198
A
T
246
A
A
399
G
C
411
T
G
551
A
G
555
A
T
659
C
G
664
A
T
697
C
G
1000
A
C
1012
T
T
1035
A
T
1048
C
Show more
Deletions
4592
Insertions
ins_0:ACGCGAAAAAATGCGTACAACAAACTTGC, ins_15225:GTTTTTGACACTTTTTTTCTCGT
Amino acid mutations
Substitutions
F
F:
S
377
N
F:
A
543
V
F:
R
553
K
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
A
116
V
G:
I
134
K
G:
L
142
S
G:
G
224
E
G:
V
225
A
G:
P
234
L
G:
S
243
I
G:
L
247
P
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
G
272
D
G:
Y
273
H
G:
D
284
G
G:
Y
297
H
Show more
L
L:
R
114
K
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
S
240
N
L:
R
256
K
L:
Y
598
H
L:
D
1183
N
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
N
1748
S
L:
T
1773
M
L:
S
1789
F
L:
Y
2163
N
N
N:
Y
216
H
N:
V
352
A
P
P:
L
55
P
P:
I
63
T
P:
V
73
A
P:
N
75
Y
SH
SH:
I
38
S
Deletions
None
Insertions
None
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