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Influenza A/H5N1
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GS_001E61X.1
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Display Name: GS_001E61X.1/2024-07-05
Franco,
D.; Goya,
S.; Martinez,
A.; Moreno,
B.; Valdespino,
E.; Gaitan,
M.; Gonzalez,
C.; Moreno,
A.; Capitan-Barrios,
Z.; Carrera,
J. P.; Lopez-Verges,
S.; Pascale,
J. M.; Das,
S. R.; Arbiza,
J.; Delfraro,
A.; Abrego,
L.
Submission details
Submission ID
PQ618073.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-26 17:57:21 UTC
Date released
2024-11-26 17:57:39 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-26 17:57
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Gorgas Memorial Institute of Health Studies, Department of Research in Virology and Biotechnology
Alignment states and QC metrics
Completeness
99.91%
Length
15212
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
224
Total unknown nucs
0
Sample details
Collection country
Panama
Collection date
2024-07-05
Isolate name
hRSV/A/Panama/ICGES-369/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ618073.1
NCBI release date
2024-11-25
NCBI update date
2024-11-25
Clade & Lineage
Lineage
A.D.5.2
Nucleotide mutations
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
T
246
C
G
520
A
T
697
C
T
715
C
A
940
C
A
1009
G
C
1012
T
A
1021
G
T
1028
C
G
1050
A
A
1051
C
A
1078
G
G
1248
A
T
1254
C
Show more
Deletions
4592
Insertions
ins_2299:G
Amino acid mutations
Substitutions
F
F:
A
103
T
F:
T
122
V
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
106
E
G:
I
134
K
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
D
284
G
G:
V
303
A
G:
Y
304
H
G:
L
310
P
G:
T
319
I
G:
T
320
A
L
L:
P
171
L
L:
H
237
Y
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
G
1731
N
L:
V
1775
M
L:
V
1943
D
M
M:
M
73
L
N
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
SH
SH:
R
61
Q
Deletions
None
Insertions
None
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