Display Name: GS_001E5X5.1/2024-06-14
Franco, D.; Goya, S.; Martinez, A.; Moreno, B.; Valdespino, E.; Gaitan, M.; Gonzalez, C.; Moreno, A.; Capitan-Barrios, Z.; Carrera, J. P.; Lopez-Verges, S.; Pascale, J. M.; Das, S. R.; Arbiza, J.; Delfraro, A.; Abrego, L.

Submission details

Submission ID
PQ618069.1
Date submitted
2024-11-26 17:57:21 UTC
Date released
2024-11-26 17:57:39 UTC

Data use terms

Data use terms
OPEN

Authors

Author affiliations
Gorgas Memorial Institute of Health Studies, Department of Research in Virology and Biotechnology

Alignment states and QC metrics

Completeness
99.91%
Length
15209
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
1
Total SNPs
224
Total unknown nucs
0

Sample details

Collection country
Panama
Collection date
2024-06-14
Isolate name
hRSV/A/Panama/ICGES-362/2024

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-11-25
NCBI update date
2024-11-25

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • T246C
  • G520A
  • T697C
  • T715C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • A1078G
  • G1248A
  • T1254C
  • Deletions
    4592, 7516-7518
    Insertions
    ins_2299:G

    Amino acid mutations

    Substitutions

    F

  • F:A103T
  • F:T122V
  • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:G98E
  • G:L101F
  • G:G106E
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:T319I
  • G:T320A
  • L

  • L:P171L
  • L:H237Y
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731N
  • L:V1943D
  • M

  • M:M73L
  • N

  • N:V352A
  • P

  • P:L55P
  • P:T69I
  • SH

  • SH:R61Q
  • Deletions
    None
    Insertions
    None