GS_001E59G.1

Display Name: GS_001E59G.1/2024-07-11
Franco, D.; Goya, S.; Martinez, A.; Moreno, B.; Valdespino, E.; Gaitan, M.; Gonzalez, C.; Moreno, A.; Capitan-Barrios, Z.; Carrera, J. P.; Lopez-Verges, S.; Pascale, J. M.; Das, S. R.; Arbiza, J.; Delfraro, A.; Abrego, L.

Submission details

Submission ID
PQ618047.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-26 17:57:21 UTC
Date released
2024-11-26 17:57:39 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-26 17:57insdc_ingest_userOPEN

Authors

Author affiliations
Gorgas Memorial Institute of Health Studies, Department of Research in Virology and Biotechnology

Alignment states and QC metrics

Completeness
99.91%
Length
15213
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
224
Total unknown nucs
0

Sample details

Collection country
Panama
Collection date
2024-07-11
Isolate name
hRSV/A/Panama/ICGES-374/2024

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ618047.1
NCBI release date
2024-11-25
NCBI update date
2024-11-25

Clade & Lineage

Lineage
A.D.3.2

Nucleotide mutations

Substitutions

  • T66A
  • A67G
  • C90T
  • C156T
  • C183T
  • A280G
  • G587T
  • G590A
  • C604T
  • A608G
  • G664A
  • A682G
  • T862C
  • T988G
  • C1012T
  • G1034A
  • G1050A
  • G1077A
    • Deletions
    None
    Insertions
    ins_2298:A

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:S276N
  • F:S554N

    • G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:G98V
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:P230T
  • G:S243T
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G
  • G:P298L
  • G:Y304H

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:G1550S
  • L:I1653V
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • N

  • N:V352A

    • NS1

  • NS1:I71V

    • NS2

  • NS2:T4A

    • P

  • P:L55P
  • P:S60P
  • P:T92I
    • Deletions
    None
    Insertions
    None