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Influenza A/H5N1
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GS_001E3PP.1
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Display Name: GS_001E3PP.1/2024-07-03
Acuna,
D.; Irazoqui,
M.; Cannigia,
L. F.; Ibanez,
E.; Costa,
M.; Nadalich,
V.; Toro,
R.; Ayala,
G.; Cobas,
M. E.; Delarubia,
E.; Ghiglione,
C.; Cordero,
A.; Viegas,
M.
Submission details
Submission ID
PQ610195.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-26 17:57:21 UTC
Date released
2024-11-26 17:57:39 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-26 17:57
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
CONICET (National Council for Scientific and Technical Research), Exacts Sciences School, National University of la Plata, Argentina
Alignment states and QC metrics
Completeness
99.99%
Length
15225
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
172
Total unknown nucs
0
Sample details
Collection country
Argentina
Collection subdivision level 1
Buenos Aires, La Plata
Collection date
2024-07-03
Isolate name
HRSV/A/Argentina/PAISGONNET/8/2024-07-03
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ610195.1
NCBI release date
2024-11-25
NCBI update date
2024-11-25
Clade & Lineage
Lineage
A.D.1.5
Nucleotide mutations
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
G
198
A
A
321
G
A
351
G
A
486
G
G
551
A
C
622
T
T
697
C
A
748
G
C
999
T
G
1000
A
C
1012
T
G
1050
A
A
1171
T
T
1224
C
Show more
Deletions
4584, 7555
Insertions
ins_2297:AA
Amino acid mutations
Substitutions
F
F:
V
127
I
F:
S
377
N
G
G:
P
71
L
G:
L
101
F
G:
I
134
K
G:
L
142
S
G:
G
224
V
G:
S
243
I
G:
I
265
L
G:
D
284
G
G:
Y
304
H
G:
T
319
I
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
M
1225
I
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
M
M:
M
43
I
N
N:
S
21
C
N:
V
352
A
P
P:
L
55
P
Deletions
None
Insertions
None
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