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GS_00JZXS1.1
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Download FASTA
Download metadata TSV
Hong_Kong/GS_00JZXS1.1/2026-08-13
B. J. Cowling,
N. H. L. Leung,
S. M. S. Cheng &
M. Peiris
The University of Hong Kong, WHO Collaborating Centre for Infectious Disease Epidemiology and Control
Submission details
Submission ID
QB313251.1.seg1/QB313250.1.seg2/QB313249.1.seg3/QB313244.1.seg4/QB313247.1.seg5/QB313246.1.seg6/QB313245.1.seg7/QB313248.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-12 03:41:56 UTC
Date released
2026-11-12 03:42:37 UTC
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
Hong Kong
Collection date
2026-08-13
Isolate name
A/Hong Kong/EPI1753/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
QB313251.1
INSDC accession seg2
QB313250.1
INSDC accession seg3
QB313249.1
INSDC accession seg4
QB313244.1
INSDC accession seg5
QB313247.1
INSDC accession seg6
QB313246.1
INSDC accession seg7
QB313245.1
INSDC accession seg8
QB313248.1
NCBI release date
2026-11-10
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
106
Length seg2
2274 (97.1%)
Total SNPs seg2
118
Length seg3
2151 (96.3%)
Total ambiguous nucs seg3
1
Total SNPs seg3
90
Length seg4
1701 (97.9%)
Total SNPs seg4
129
Length seg5
1497 (95.6%)
Total SNPs seg5
60
Length seg6
1410 (98%)
Total SNPs seg6
19
Length seg7
981 (95.5%)
Total SNPs seg7
29
Length seg8
837 (94%)
Total SNPs seg8
30
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
T
426
C
T
438
C
Show more
seg2
C
43
T
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
C
147
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
Show more
seg3
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
A
396
G
A
435
G
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
A
134
G
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
Show more
seg5
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
A
453
G
C
459
T
T
465
C
G
492
A
A
513
G
Show more
seg6
G
34
A
C
40
T
A
64
G
T
100
C
T
304
C
C
349
A
G
456
A
G
517
A
C
797
A
T
1015
C
A
1044
G
A
1079
G
A
1099
G
A
1160
G
G
1206
A
G
1342
A
G
1390
A
A
1410
G
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
C
259
T
T
292
C
T
298
C
A
331
G
A
466
G
A
481
G
C
493
T
T
511
C
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
G
430
A
A
442
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
F
79
I
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
HA2:
L
203
V
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
I
348
T
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
L
210
Q
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
T
10
I
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
V
444
I
PB2:
I
451
V
PB2:
V
560
I
PB2:
A
569
T
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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