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Influenza B/Victoria
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GS_00JYS99.1
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Download metadata TSV
USA/GS_00JYS99.1/2026-08-14
A. USDA Swine Surveillance
USDA Swine Surveillance, USDA Swine Surveillance
Submission details
Submission ID
QB279977.1.seg1/QB279976.1.seg2/QB279975.1.seg3/QB279970.1.seg4/QB279974.1.seg5/QB279972.1.seg6/QB279971.1.seg7/QB279973.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-04 03:53:13 UTC
Date released
2026-11-04 03:53:51 UTC
Clade
Clade HA
B.1
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Ohio
Collection date
2026-08-14
Isolate name
A/swine/Ohio/A02685358/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg1
QB279977.1
INSDC accession seg2
QB279976.1
INSDC accession seg3
QB279975.1
INSDC accession seg4
QB279970.1
INSDC accession seg5
QB279974.1
INSDC accession seg6
QB279972.1
INSDC accession seg7
QB279971.1
INSDC accession seg8
QB279973.1
NCBI release date
2026-11-03
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2280 (96.9%)
Total ambiguous nucs seg1
8
Total SNPs seg1
392
Total unknown nucs seg1
4
Length seg2
2274 (96.8%)
Total ambiguous nucs seg2
8
Total SNPs seg2
204
Length seg3
2154 (96.1%)
Total ambiguous nucs seg3
1
Total inserted nucs seg3
3
Total SNPs seg3
369
Total unknown nucs seg3
3
Length seg4
1701 (97.7%)
Total ambiguous nucs seg4
4
Total SNPs seg4
115
Length seg5
1497 (95.6%)
Total SNPs seg5
273
Length seg6
1410 (98%)
Total SNPs seg6
76
Length seg7
982 (95.6%)
Total SNPs seg7
140
Length seg8
838 (94.2%)
Total SNPs seg8
140
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
A
33
G
C
49
A
G
51
A
A
52
G
G
57
A
T
69
C
G
87
C
A
90
T
A
93
G
A
99
T
G
102
A
T
108
C
T
120
C
G
123
A
G
135
A
G
138
A
A
141
G
A
147
G
Show more
seg2
T
42
C
G
48
T
A
69
G
C
84
T
T
105
C
G
177
A
A
179
G
G
180
A
G
186
A
A
204
G
A
219
G
C
225
T
A
228
G
G
249
A
G
258
A
C
289
T
G
294
A
T
297
C
Show more
seg3
C
54
T
G
57
A
T
63
C
A
69
G
A
75
G
A
81
G
G
93
A
A
95
T
A
99
G
G
102
A
T
107
C
A
111
G
A
120
C
A
126
G
T
129
C
A
132
T
C
144
G
A
156
C
Show more
seg4
T
46
G
T
53
C
G
56
A
G
57
A
C
72
A
C
77
T
C
89
T
A
90
G
G
95
A
C
116
T
G
155
A
A
156
G
A
163
G
T
173
C
C
189
T
G
199
A
C
203
A
C
208
T
Show more
seg5
C
54
T
G
69
A
T
72
A
G
81
A
A
87
G
T
90
G
A
92
G
G
96
A
T
99
G
A
106
G
A
111
C
T
114
A
G
117
A
T
120
C
G
123
A
C
129
T
G
135
A
A
137
G
Show more
seg6
G
34
T
A
55
C
C
61
T
A
62
G
C
92
T
G
94
A
G
104
A
A
147
G
T
148
C
T
162
A
G
163
A
T
166
C
C
223
T
G
227
A
C
244
T
C
248
T
A
280
G
A
295
G
Show more
seg7
C
31
T
T
55
C
C
61
T
G
68
A
T
70
A
A
73
G
T
109
G
G
113
A
A
114
G
T
124
A
G
127
A
A
130
G
C
133
T
T
139
C
T
178
C
C
179
T
C
188
T
G
199
A
Show more
seg8
T
32
C
C
38
T
T
50
C
C
53
T
C
65
T
T
68
C
T
77
C
G
83
C
A
88
G
G
90
T
T
94
C
C
99
A
A
101
T
A
103
G
A
108
G
G
148
A
G
157
A
G
158
A
Show more
Deletions
N/A
Insertions
seg3
ins_1968:AGT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
S
9
G
HA1:
N
31
D
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
E
HA1:
D
53
N
HA1:
I
58
V
HA1:
I
67
V
HA1:
G
78
D
HA1:
K
83
Q
HA1:
K
92
R
HA1:
A
106
V
HA1:
N
121
E
HA1:
D
122
N
HA1:
R
142
G
HA1:
N
144
E
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
I
149
M
HA2:
D
160
N
HA2:
V
200
A
M1
M1:
V
15
I
M1:
D
30
S
M1:
K
95
R
M1:
R
101
K
M1:
I
115
V
M1:
A
116
S
M1:
A
121
T
M1:
A
137
T
M1:
V
142
A
M1:
V
166
A
M1:
A
167
T
M1:
K
174
R
M1:
I
205
V
M1:
S
207
N
M1:
A
209
T
M1:
Q
214
H
M1:
A
218
T
M1:
V
219
I
M1:
R
230
K
M1:
T
239
A
M2
M2:
E
14
G
M2:
G
16
E
M2:
N
20
S
M2:
D
21
G
M2:
S
22
L
M2:
V
27
A
M2:
V
28
I
M2:
S
31
N
M2:
L
43
T
M2:
V
51
I
M2:
L
54
R
M2:
F
55
I
M2:
H
57
Y
M2:
R
77
Q
M2:
K
78
Q
M2:
N
82
S
M2:
A
86
V
M2:
S
89
G
M2:
S
93
N
NA
NA:
T
19
A
NA:
V
33
I
NA:
N
47
S
NA:
L
52
Q
NA:
E
74
K
NA:
P
81
S
NA:
L
126
P
NA:
D
127
E
NA:
R
150
H
NA:
K
199
N
NA:
N
220
K
NA:
D
221
N
NA:
N
245
S
NA:
T
247
A
NA:
I
303
V
NA:
K
308
E
NA:
R
315
S
NA:
S
329
A
Show more
NEP
NEP:
L
14
M
NEP:
I
32
V
NEP:
Q
34
R
NEP:
S
37
A
NEP:
A
48
T
NEP:
L
57
Y
NEP:
G
63
E
NEP:
F
107
L
NP
NP:
D
16
G
NP:
D
18
E
NP:
N
21
D
NP:
K
31
R
NP:
I
33
V
NP:
D
34
G
NP:
R
38
K
NP:
L
61
I
NP:
K
65
R
NP:
S
84
N
NP:
V
109
I
NP:
I
119
V
NP:
I
186
V
NP:
M
189
I
NP:
V
190
A
NP:
V
197
I
NP:
K
214
R
NP:
S
217
I
Show more
NS1
NS1:
Q
21
R
NS1:
V
22
F
NS1:
V
23
A
NS1:
Q
25
N
NS1:
E
26
G
NS1:
S
28
G
NS1:
R
41
K
NS1:
R
44
K
NS1:
G
51
S
NS1:
K
55
E
NS1:
A
56
T
NS1:
H
59
L
NS1:
K
67
W
NS1:
E
72
G
NS1:
D
74
S
NS1:
A
76
I
NS1:
T
80
S
NS1:
M
81
T
Show more
PA
PA:
Y
24
F
PA:
L
28
P
PA:
N
55
D
PA:
V
62
I
PA:
L
65
S
PA:
D
66
G
PA:
A
100
V
PA:
N
142
K
PA:
I
155
M
PA:
N
184
S
PA:
S
208
T
PA:
D
216
N
PA:
K
222
N
PA:
C
225
S
PA:
N
254
S
PA:
K
256
Q
PA:
I
268
L
PA:
K
269
R
Show more
PA-X
PA-X:
Y
24
F
PA-X:
L
28
P
PA-X:
N
55
D
PA-X:
V
62
I
PA-X:
L
65
S
PA-X:
D
66
G
PA-X:
A
100
V
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
N
184
S
PA-X:
P
194
Q
PA-X:
K
195
R
PA-X:
E
196
G
PA-X:
K
199
R
PA-X:
S
207
L
PA-X:
L
210
P
PA-X:
V
212
A
PA-X:
N
222
T
Show more
PB1
PB1:
K
52
R
PB1:
V
113
I
PB1:
M
171
V
PB1:
E
172
D
PB1:
K
198
R
PB1:
V
212
M
PB1:
N
213
G
PB1:
G
216
S
PB1:
K
327
R
PB1:
I
339
M
PB1:
I
342
V
PB1:
A
374
S
PB1:
V
423
I
PB1:
K
433
R
PB1:
K
577
R
PB1:
R
586
K
PB1:
N
619
D
PB1:
E
638
D
Show more
PB1-F2
PB1-F2:
R
20
K
PB1-F2:
R
21
E
PB1-F2:
S
23
N
PB1-F2:
K
29
R
PB1-F2:
N
34
S
PB1-F2:
T
36
I
PB1-F2:
Q
37
R
PB1-F2:
R
44
K
PB1-F2:
S
47
N
PB1-F2:
R
59
K
PB1-F2:
L
60
P
PB1-F2:
P
62
R
PB1-F2:
V
70
G
PB1-F2:
S
71
Y
PB1-F2:
T
74
I
PB1-F2:
Q
79
P
PB1-F2:
S
82
L
PB1-F2:
F
83
S
PB1-F2:
W
88
*
PB1-F2:
T
89
I
PB2
PB2:
N
9
D
PB2:
S
44
A
PB2:
T
64
M
PB2:
E
65
D
PB2:
M
66
I
PB2:
V
67
I
PB2:
M
81
T
PB2:
S
82
N
PB2:
V
105
T
PB2:
A
106
T
PB2:
D
120
E
PB2:
I
147
T
PB2:
K
157
R
PB2:
R
194
Q
PB2:
S
199
A
PB2:
I
227
V
PB2:
M
294
L
PB2:
M
365
V
Show more
SigPep
SigPep:
I
10
S
SigPep:
V
14
I
Deletions
N/A
Insertions
PA
ins_PA:645:X
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