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GS_00JYQX0.1
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USA/GS_00JYQX0.1/2026-08-20
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
QB015149.1.seg4/QB015150.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-04 03:53:13 UTC
Date released
2026-11-04 03:53:51 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-08-20
Isolate name
A/swine/Iowa/A03690891/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
QB015149.1
INSDC accession seg6
QB015150.1
NCBI release date
2026-09-16
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total SNPs seg4
211
Length seg6
1410 (98%)
Total SNPs seg6
160
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
38
T
A
43
G
C
48
T
T
49
C
T
53
C
G
57
A
A
80
G
A
82
G
C
89
A
C
100
T
T
110
G
G
113
A
C
116
T
A
138
T
A
156
G
C
161
T
A
164
G
T
173
G
Show more
seg6
G
34
A
C
52
T
C
54
T
A
55
C
T
59
G
T
74
C
C
76
T
C
91
T
A
95
T
G
112
A
T
125
C
A
130
T
T
132
G
T
137
G
C
140
T
C
143
T
A
147
G
T
148
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
N
6
S
HA1:
N
8
K
HA1:
T
12
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
G
49
D
HA1:
G
50
K
HA1:
D
53
N
HA1:
Q
57
K
HA1:
I
58
V
HA1:
E
62
G
HA1:
Q
75
H
HA1:
G
78
D
HA1:
Q
80
G
HA1:
K
83
E
HA1:
K
92
T
HA1:
N
96
D
HA1:
D
101
Y
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HA2
HA2:
Q
27
K
HA2:
I
32
T
HA2:
N
49
T
HA2:
L
55
V
HA2:
G
57
K
HA2:
K
124
R
HA2:
Q
125
L
HA2:
A
147
T
HA2:
D
164
N
HA2:
N
168
D
HA2:
E
177
Q
HA2:
F
191
L
HA2:
A
201
V
HA2:
I
206
V
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
L
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
S
44
A
NA:
P
45
S
NA:
P
46
S
NA:
N
47
S
NA:
V
50
M
NA:
T
69
A
NA:
T
71
N
NA:
P
81
L
NA:
G
93
K
NA:
L
126
P
NA:
N
147
D
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
L
11
S
SigPep:
V
14
I
Deletions
N/A
Insertions
N/A
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