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GS_00JYQW2.1
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USA/GS_00JYQW2.1/2026-08-19
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
QB015143.1.seg4/QB015144.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-04 03:53:13 UTC
Date released
2026-11-04 03:53:51 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Oklahoma
Collection date
2026-08-19
Isolate name
A/swine/Oklahoma/A03690888/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
QB015143.1
INSDC accession seg6
QB015144.1
NCBI release date
2026-09-16
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total SNPs seg4
129
Length seg6
1410 (98%)
Total SNPs seg6
173
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
T
42
C
G
56
A
C
76
A
C
77
T
A
80
T
T
83
C
G
91
A
C
94
T
G
113
A
A
125
G
C
152
T
A
165
G
A
206
T
C
208
A
G
210
A
G
214
A
G
222
A
C
224
T
Show more
seg6
G
34
A
C
54
T
A
55
C
T
59
G
C
76
T
A
83
G
A
95
C
C
99
T
A
106
G
A
120
G
T
125
C
T
127
C
A
130
T
T
132
G
T
148
A
G
157
A
G
160
A
C
161
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
P
4
H
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
34
V
HA1:
T
48
K
HA1:
G
49
S
HA1:
G
50
E
HA1:
D
53
N
HA1:
Q
57
R
HA1:
I
58
V
HA1:
G
78
S
HA1:
K
82
S
HA1:
Y
94
H
HA1:
V
112
I
HA1:
N
121
T
HA1:
D
122
N
HA1:
N
133
D
HA1:
K
158
N
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
116
S
HA2:
R
121
K
HA2:
N
168
S
HA2:
G
175
R
HA2:
G
181
E
HA2:
K
183
E
HA2:
F
196
L
HA2:
R
216
K
NA
NA:
T
16
I
NA:
S
18
A
NA:
I
26
V
NA:
I
30
L
NA:
T
31
I
NA:
K
38
R
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
47
K
NA:
M
51
I
NA:
L
52
F
NA:
I
58
L
NA:
I
62
K
NA:
T
69
I
NA:
I
73
V
NA:
N
86
D
NA:
G
93
N
Show more
SigPep
SigPep:
Y
9
H
Deletions
N/A
Insertions
N/A
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