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Influenza A/H3N2
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GS_00JWLAH.1
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Download FASTA
Download metadata TSV
USA/GS_00JWLAH.1/2026-07-28
V. Dugan,
M. Kirby,
R. Garten &
T. Davis
Centers for Disease Control and Prevention, Influenza Division
Submission details
Submission ID
QB205085.1.seg1/QB205086.1.seg2/QB205087.1.seg3/QB205088.1.seg4/QB205089.1.seg5/QB205090.1.seg6/QB205091.1.seg7/QB205092.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-21 08:10:20 UTC
Date released
2026-10-21 08:11:24 UTC
INSDC
bioprojectAccession
PRJNA998880
INSDC accession seg1
QB205085.1
INSDC accession seg2
QB205086.1
INSDC accession seg3
QB205087.1
INSDC accession seg4
QB205088.1
INSDC accession seg5
QB205089.1
INSDC accession seg6
QB205090.1
INSDC accession seg7
QB205091.1
INSDC accession seg8
QB205092.1
NCBI release date
2026-10-20
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Hawaii, Honolulu
Collection date
2026-07-28
Isolate name
A/Hawaii/77/2026
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2316 (98.9%)
Total SNPs seg1
107
Length seg2
2316 (98.9%)
Total SNPs seg2
114
Length seg3
2208 (98.9%)
Total SNPs seg3
96
Length seg4
1737 (100%)
Total SNPs seg4
126
Length seg5
1541 (98.4%)
Total SNPs seg5
58
Length seg6
1441 (100%)
Total inserted nucs seg6
2
Total SNPs seg6
20
Length seg7
1002 (97.6%)
Total SNPs seg7
28
Length seg8
865 (97.2%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
T
423
C
Show more
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
A
342
T
Show more
seg3
G
22
A
T
33
C
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
T
180
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
A
81
G
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
Show more
seg5
A
16
G
C
29
T
A
40
C
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
G
327
A
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
Show more
seg6
C
40
T
C
63
T
A
64
G
T
100
C
C
349
A
G
456
A
G
517
A
C
544
T
C
797
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
C
1163
T
G
1206
A
G
1211
A
G
1342
A
G
1390
A
A
1410
G
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
G
781
A
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
350
A
G
353
A
G
398
A
G
416
A
G
430
A
Show more
Deletions
N/A
Insertions
seg6
ins_1439:CT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
N
6
D
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
S
23
N
M2:
P
25
L
M2:
S
31
N
M2:
L
43
I
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
T
19
M
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
P
386
S
NA:
R
400
K
NA:
D
402
N
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PA-X:
K
251
R
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
R
386
K
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
545
I
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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