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Influenza A/H3N2
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GS_00JWJEB.1
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Download FASTA
Download metadata TSV
USA/GS_00JWJEB.1/2026-07-24
V. Dugan,
M. Kirby,
R. Garten &
T. Davis
Centers for Disease Control and Prevention, Influenza Division
Submission details
Submission ID
QB204560.1.seg1/QB204561.1.seg2/QB204562.1.seg4/QB204563.1.seg5/QB204564.1.seg6/QB204565.1.seg7/QB204566.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-21 08:10:20 UTC
Date released
2026-10-21 08:11:24 UTC
INSDC
bioprojectAccession
PRJNA998880
INSDC accession seg1
QB204560.1
INSDC accession seg2
QB204561.1
INSDC accession seg4
QB204562.1
INSDC accession seg5
QB204563.1
INSDC accession seg6
QB204564.1
INSDC accession seg7
QB204565.1
INSDC accession seg8
QB204566.1
NCBI release date
2026-10-20
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Georgia
Collection date
2026-07-24
Isolate name
A/Georgia/69/2026
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2316 (98.9%)
Total SNPs seg1
110
Length seg2
2316 (98.9%)
Total SNPs seg2
114
Length seg4
1737 (100%)
Total SNPs seg4
129
Length seg5
1541 (98.4%)
Total SNPs seg5
60
Length seg6
1442 (100%)
Total inserted nucs seg6
3
Total SNPs seg6
22
Length seg7
1002 (97.6%)
Total SNPs seg7
27
Length seg8
865 (97.2%)
Total SNPs seg8
34
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
C
420
T
Show more
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
201
G
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
309
G
A
312
G
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
A
16
G
C
29
T
C
39
T
A
40
C
G
81
A
G
96
A
T
114
C
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
Show more
seg6
C
40
T
A
64
G
T
100
C
C
349
A
G
456
A
G
517
A
C
797
A
T
1015
C
A
1044
G
A
1079
G
A
1123
G
C
1158
T
A
1160
G
A
1166
G
A
1167
G
G
1206
A
A
1298
G
G
1342
A
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
G
760
A
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
A
209
G
A
221
T
A
238
G
T
271
C
C
275
G
T
284
A
G
353
A
G
398
A
G
416
A
Show more
Deletions
N/A
Insertions
seg6
ins_1439:ACT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
S
124
I
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
G
16
E
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
S
384
F
NA:
N
385
D
NA:
K
387
G
NA:
R
400
K
NA:
K
431
E
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
V
180
I
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
R
386
K
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
Q
28
R
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
L
64
W
PB1-F2:
K
65
R
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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