GS_00JTRY7.1

Thailand/GS_00JTRY7.1/2024-12-13
A. O. Sementsova, M. A. Stepanyuk, E. V. Protopopova, K. V. Karelina, E. P. Ponomareva, T. V. Tregubchak, M. V. Sivay, L. V. Maksimenko, V. A. Ternovoi & N. L. Tupota

State Research Center of Virology and Biotechnology 'Vector', Department of Molecular Virology of Flaviviruses and Viral Hepatitis

Submission details

Submission ID
QB138970.1
Submitting group
Date submitted
2026-10-13 06:30:13 UTC
Date released
2026-10-13 06:30:25 UTC

Clade & Lineage

Clade
3III_B.1

Sample details

Collection country
Thailand
Collection subdivision level 1
Ko Samui
Collection date
2024-12-13
Isolate name
Ko_Samui_2024

Host

Host

INSDC

INSDC accession
NCBI release date
2026-10-12
NCBI update date
2026-10-12

Alignment and QC

Length
10701 (100%)
Total deleted nucs
8
Total inserted nucs
2
Total SNPs
465

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions
  • G65A
  • A199G
  • C203T
  • T235C
  • T250C
  • C256T
  • A265G
  • C289T
  • T295C
  • A351G
  • C383A
  • A384G
  • A454G
  • T496A
  • C529T
  • T556C
  • C577T
  • C595T
Deletions
10278-10285
Insertions
ins_10436:A, ins_10601:A

Amino acid substitutions

Substitutions called relative to the NC_001475.2 reference

Substitutions

2K

  • 2K:T20I

C

  • C:K86R
  • C:Q97R

E

  • E:P124L
  • E:A219T
  • E:S271T
  • E:I380T
  • E:E404A
  • E:A489V

NS1

  • NS1:L94I
  • NS1:A146T
  • NS1:L178M
  • NS1:K206R
  • NS1:T233S
  • NS1:S290N

NS2A

  • NS2A:L23M
  • NS2A:K95R
  • NS2A:V127I
  • NS2A:T142I
  • NS2A:V150I

NS2B

  • NS2B:P57A
  • NS2B:T128N

NS3

  • NS3:F31L
  • NS3:T112M
  • NS3:A310T
  • NS3:D392E

NS4A

  • NS4A:D36H
  • NS4A:I89V
  • NS4A:V100I

NS4B

  • NS4B:M151I
  • NS4B:S157P
  • NS4B:F160Y

NS5

  • NS5:V72I
  • NS5:T188A
  • NS5:D274E
  • NS5:A372V
  • NS5:I553T
  • NS5:Q562L
  • NS5:L603V
  • NS5:T629S
  • NS5:A631T
  • NS5:L639S
  • NS5:K656Q
  • NS5:E820D
  • NS5:P864S
  • NS5:E892D

prM

  • prM:T107A
Deletions
N/A
Insertions
N/A