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Organisms
Influenza A/H1N1pdm
GenSpectrum
Organisms
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza B
Influenza B/Victoria
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Influenza A/H1N1pdm
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GS_00JTR4W.1
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Download FASTA
Download metadata TSV
USA/GS_00JTR4W.1/2026-09-13
A. Hassan
NJDOH PHEL Virology Shared Submissions, Public Health and Environmental Laboratories, Virology
Submission details
Submission ID
QB154071.1.seg1/QB154072.1.seg2/QB154073.1.seg3/QB154074.1.seg4/QB154075.1.seg5/QB154076.1.seg6/QB154077.1.seg7/QB154078.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-10 07:39:56 UTC
Date released
2026-10-10 07:40:41 UTC
Clade
Clade HA
D.3.1
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-09-13
Isolate name
A/New Jersey/V26010420/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
QB154071.1
INSDC accession seg2
QB154072.1
INSDC accession seg3
QB154073.1
INSDC accession seg4
QB154074.1
INSDC accession seg5
QB154075.1
INSDC accession seg6
QB154076.1
INSDC accession seg7
QB154077.1
INSDC accession seg8
QB154078.1
NCBI release date
2026-10-09
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
91
Length seg2
2274 (100%)
Total SNPs seg2
76
Length seg3
2151 (100%)
Total SNPs seg3
85
Length seg4
1701 (97.1%)
Total SNPs seg4
113
Length seg5
1497 (100%)
Total SNPs seg5
63
Length seg6
1410 (98.4%)
Total SNPs seg6
30
Length seg7
982 (100%)
Total SNPs seg7
28
Length seg8
838 (97.1%)
Total SNPs seg8
37
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
C
309
T
Show more
seg2
G
42
A
A
159
G
G
168
A
G
180
A
C
192
T
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
A
345
G
A
366
G
T
384
C
C
447
T
T
450
C
G
461
A
T
474
C
Show more
seg3
G
40
A
R
53
A
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
G
126
A
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
A
339
G
G
423
A
G
477
A
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
C
443
T
Show more
seg5
A
33
G
G
42
T
G
51
A
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
G
309
A
T
314
C
G
315
A
R
341
A
T
357
C
T
365
A
Show more
seg6
A
137
G
A
144
G
G
163
A
T
236
C
C
244
T
G
292
A
C
380
T
C
452
A
G
607
A
G
623
A
T
662
C
A
785
G
T
799
C
C
821
T
C
893
T
G
914
T
C
929
T
G
969
A
Show more
seg7
G
75
A
C
124
A
T
168
C
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
504
T
C
507
A
T
546
A
A
574
G
C
622
A
Show more
seg8
C
6
A
C
42
T
C
54
T
C
57
T
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
G
363
A
G
366
A
A
367
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
G
155
E
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
I
46
V
NA:
S
52
N
NA:
S
79
L
NA:
S
95
N
NA:
S
200
N
NA:
I
264
T
NA:
V
321
I
NA:
N
329
D
NA:
A
343
K
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
N
127
S
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
V
14
I
PA:
X
18
E
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
E
399
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
K
482
R
PB2:
I
559
M
PB2:
M
631
V
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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