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Influenza A/H1N1pdm
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Influenza A/H1N1pdm
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GS_00JTQQQ.1
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Download FASTA
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USA/GS_00JTQQQ.1/2026-08-08
A. Hassan
NJDOH PHEL Virology Shared Submissions, Public Health and Environmental Laboratories, Virology
Submission details
Submission ID
QB153980.1.seg2/QB153981.1.seg4/QB153982.1.seg5/QB153983.1.seg6/QB153984.1.seg7/QB153985.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-10 07:39:56 UTC
Date released
2026-10-10 07:40:41 UTC
Clade
Clade HA
D.3.1
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-08-08
Isolate name
A/New Jersey/V26008934/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg2
QB153980.1
INSDC accession seg4
QB153981.1
INSDC accession seg5
QB153982.1
INSDC accession seg6
QB153983.1
INSDC accession seg7
QB153984.1
INSDC accession seg8
QB153985.1
NCBI release date
2026-10-09
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg2
2274 (100%)
Total SNPs seg2
75
Length seg4
1701 (97.1%)
Total SNPs seg4
112
Length seg5
1497 (100%)
Total SNPs seg5
62
Length seg6
1410 (98.4%)
Total SNPs seg6
30
Length seg7
982 (100%)
Total SNPs seg7
27
Length seg8
838 (97%)
Total ambiguous nucs seg8
1
Total SNPs seg8
38
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg2
G
42
A
A
159
G
G
168
A
G
180
A
C
192
T
T
207
A
T
210
C
T
222
C
G
223
A
G
225
A
C
297
T
G
312
A
A
345
G
A
366
G
T
384
C
C
447
T
T
450
C
G
461
A
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
C
443
T
Show more
seg5
A
33
G
G
42
T
G
51
A
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
G
309
A
T
314
C
G
315
A
R
341
A
T
357
C
T
365
A
Show more
seg6
A
137
G
A
144
G
G
163
A
C
244
T
G
292
A
C
380
T
C
452
A
G
607
A
G
623
A
T
662
C
A
785
G
T
799
C
C
821
T
A
839
G
C
893
T
G
914
T
C
929
T
G
969
A
Show more
seg7
G
75
A
C
124
A
T
168
C
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
T
546
A
A
574
G
C
622
A
G
660
A
Show more
seg8
C
6
A
C
42
T
C
54
T
C
57
T
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
G
363
A
G
366
A
A
367
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
I
46
V
NA:
S
52
N
NA:
S
79
L
NA:
S
95
N
NA:
S
200
N
NA:
I
264
T
NA:
V
321
I
NA:
N
329
D
NA:
A
343
K
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
L
55
F
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
N
127
S
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
NS1:
P
212
L
PB1
PB1:
E
75
K
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
K
757
R
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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