GenSpectrum
Organisms
Influenza A/H3N2
GenSpectrum
Organisms
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza B
Influenza B/Victoria
Docs
API docs
Influenza A/H3N2
|
Browse data
Select organism section
Browse data
GS_00JTQ5V.1
Download
Download FASTA
Download metadata TSV
USA/GS_00JTQ5V.1/2026-07-24
A. USDA Swine Influenza Surveillance &
M. Sturos
USDA
Submission details
Submission ID
QB144476.1.seg4/QB144477.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-08 08:10:13 UTC
Date released
2026-10-20 21:22:41 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection date
2026-07-24
Isolate name
A/swine/Minnesota/A02980845/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
QB144476.1
INSDC accession seg6
QB144477.1
NCBI release date
2026-10-07
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.7%)
Total ambiguous nucs seg4
4
Total SNPs seg4
210
Length seg6
1410 (98%)
Total SNPs seg6
163
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
38
T
A
43
G
C
48
T
T
49
C
T
53
C
G
57
A
C
72
A
A
80
G
A
82
G
C
89
A
C
100
T
T
110
G
G
113
A
A
138
T
A
156
G
C
161
T
A
164
G
T
173
G
Show more
seg6
T
13
C
G
34
A
C
52
T
C
54
T
A
55
C
T
59
G
C
73
T
T
74
C
C
76
T
C
91
T
A
95
T
G
112
A
T
125
C
A
130
T
T
132
G
T
137
A
C
140
T
C
143
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
N
6
S
HA1:
N
8
K
HA1:
T
12
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
G
49
D
HA1:
G
50
K
HA1:
D
53
K
HA1:
Q
57
K
HA1:
I
58
V
HA1:
E
62
G
HA1:
Q
75
H
HA1:
G
78
E
HA1:
Q
80
G
HA1:
K
83
E
HA1:
K
92
T
HA1:
N
96
D
Show more
HA2
HA2:
Q
27
K
HA2:
S
29
Y
HA2:
I
32
T
HA2:
N
49
T
HA2:
L
55
V
HA2:
G
57
K
HA2:
K
124
R
HA2:
Q
125
L
HA2:
A
147
T
HA2:
V
161
I
HA2:
D
164
N
HA2:
N
168
D
HA2:
E
177
Q
HA2:
I
206
V
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
L
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
S
44
T
NA:
P
45
S
NA:
P
46
S
NA:
N
47
S
NA:
V
50
M
NA:
T
69
A
NA:
T
71
N
NA:
P
81
L
NA:
G
93
K
NA:
L
126
P
NA:
N
147
D
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
L
11
S
SigPep:
V
14
I
Deletions
N/A
Insertions
N/A
Load sequences