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Influenza A/H3N2
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GS_00JPUXE.1
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USA/GS_00JPUXE.1/2026-09-13
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Girinathan,
H. Mammadova,
P. Leeson &
D. Gratalo
Perimeter
Submission details
Submission ID
QB092672.1.seg1/QB092671.1.seg2/QB092670.1.seg3/QB092673.1.seg4/QB092674.1.seg6/QB092668.1.seg7/QB092669.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-30 08:10:08 UTC
Date released
2026-09-30 08:11:16 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg1
QB092672.1
INSDC accession seg2
QB092671.1
INSDC accession seg3
QB092670.1
INSDC accession seg4
QB092673.1
INSDC accession seg6
QB092674.1
INSDC accession seg7
QB092668.1
INSDC accession seg8
QB092669.1
NCBI release date
2026-09-29
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-09-13
Isolate name
A/California/GKISBBBK85843/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2318 (99%)
Total SNPs seg1
109
Length seg2
2316 (98.9%)
Total SNPs seg2
111
Length seg3
2209 (98.9%)
Total inserted nucs seg3
1
Total SNPs seg3
96
Length seg4
1737 (100%)
Total SNPs seg4
122
Length seg6
1436 (99.6%)
Total inserted nucs seg6
3
Total SNPs seg6
22
Length seg7
1004 (97.8%)
Total SNPs seg7
29
Length seg8
865 (97.2%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
G
51
A
C
54
T
G
57
A
T
75
C
G
87
A
G
123
A
C
192
T
C
198
T
T
255
C
G
272
A
A
282
G
C
289
A
A
336
G
G
342
T
G
343
A
G
347
A
A
369
G
Show more
seg2
A
45
G
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
G
180
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
A
342
T
Show more
seg3
G
22
A
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
T
349
C
G
363
A
T
369
C
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg6
C
40
T
A
64
G
T
100
C
G
251
A
T
325
C
C
349
A
G
456
A
C
575
T
A
603
C
C
797
A
A
806
C
C
832
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
A
1167
C
G
1206
A
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
T
316
C
G
343
A
A
448
G
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
G
616
A
A
637
G
A
658
G
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
G
430
A
A
442
G
Show more
Deletions
N/A
Insertions
seg3
ins_2211:A
seg6
ins_1439:AAC
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
A
82
T
NA:
R
150
H
NA:
K
199
T
NA:
H
264
N
NA:
K
267
Q
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
K
387
T
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
K
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
S
82
N
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
T
184
S
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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