GS_00JPUNY.1

USA/GS_00JPUNY.1/2026-09-15
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
QB092644.1.seg1/QB092645.1.seg2/QB092643.1.seg3/QB092638.1.seg4/QB092641.1.seg5/QB092640.1.seg6/QB092639.1.seg7/QB092642.1.seg8
Submitting group
Date submitted
2026-09-30 05:01:43 UTC
Date released
2026-09-30 05:02:19 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-29

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-09-15
Isolate name
B/California/GKISBBBK18390/2026

Host

Host

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2356 (100%)
Total inserted nucs seg1
22
Total SNPs seg1
51
Length seg2
2381 (100%)
Total inserted nucs seg2
23
Total SNPs seg2
62
Length seg3
2278 (100%)
Total inserted nucs seg3
33
Total SNPs seg3
56
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
57
Length seg5
1817 (100%)
Total inserted nucs seg5
67
Total SNPs seg5
38
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
37
Length seg7
1139 (99.3%)
Total SNPs seg7
19
Length seg8
1066 (99.6%)
Total inserted nucs seg8
4
Total SNPs seg8
23

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G158T
  • G197A
  • A200G
  • A209G
  • A359G
  • G383A
  • C434T
  • T522C
  • C528A
  • C746A
  • C798T
  • T824G
  • A827G
  • C854T
  • A921G
  • A950G
  • T962C

seg2

  • G12A
  • T25C
  • A54G
  • G81A
  • T168C
  • T171C
  • T174C
  • T240C
  • C258T
  • T300A
  • T309C
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T

seg3

  • A69G
  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • G817A
  • G867A
  • C897T
  • A935G
  • G936A
  • A987G

seg4

  • G156A
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A387G
  • A427G
  • A435G
  • C441T
  • C442A
  • T444C
  • T456C
  • G457A
  • A484G

seg5

  • C3T
  • T46C
  • A55G
  • C166T
  • C178T
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • G451A
  • A454G
  • A502G
  • C523T
  • C608T

seg6

  • T9C
  • C23T
  • T34C
  • C125A
  • T134C
  • G194A
  • T212C
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • T594C
  • A660C
  • T714A
  • C849T
  • T879C

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • A149G
  • G316A
  • T320C
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • C808T
  • A919G
  • C922T
  • G1064A

seg8

  • G26A
  • A118G
  • G133A
  • T163C
  • G190A
  • A292G
  • T341C
  • A352C
  • T355C
  • C358A
  • A389G
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • G661A
  • G731A
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGCTCGTGTTTCTAC

seg2

ins_0:GTTTTC, ins_2358:AATGCTCGTGTTTCTAC

seg3

ins_0:GCGTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAATG

seg5

ins_0:GCATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg8

ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

BM2

  • BM2:E106K

HA1

  • HA1:I117V
  • HA1:H122N
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:E198K
  • HA1:A199T
  • HA1:K203R
  • HA1:T258P
  • HA1:R279K

HA2

  • HA2:R151K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:T8M
  • NA:F12L
  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397N
  • NA:V401I

NEP

  • NEP:M15I
  • NEP:L30S
  • NEP:S75N
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A
  • NP:I489V

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:T120A
  • NS1:L130F
  • NS1:H201Y
  • NS1:E234K

PA

  • PA:E273K
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:S547G
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB1

  • PB1:K52N
  • PB1:M65I
  • PB1:T307A
  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:L555I
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A