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Influenza A/H1N1pdm
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Influenza A/H1N1pdm
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GS_00JPT9S.1
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Download FASTA
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India/GS_00JPT9S.1/2026-08-02
S. Karade &
R. Ranjan
Army Hospital Research and Referral, Viral Research and Diagnostic Laboratory
Submission details
Submission ID
PZ899310.1.seg1/PZ899305.1.seg4/PZ899308.1.seg5/PZ899307.1.seg6/PZ899306.1.seg7/PZ899309.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-29 07:39:53 UTC
Date released
2026-09-29 07:40:21 UTC
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
India
Collection subdivision level 1
Delhi
Collection date
2026-08-02
Isolate name
A/Delhi/A-AHRR-03-2026/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ899310.1
INSDC accession seg4
PZ899305.1
INSDC accession seg5
PZ899308.1
INSDC accession seg6
PZ899307.1
INSDC accession seg7
PZ899306.1
INSDC accession seg8
PZ899309.1
NCBI release date
2026-09-27
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2316 (100%)
Total inserted nucs seg1
36
Total SNPs seg1
68
Length seg4
1752 (100%)
Total SNPs seg4
118
Length seg5
1541 (100%)
Total inserted nucs seg5
44
Total SNPs seg5
64
Length seg6
1432 (99.9%)
Total SNPs seg6
23
Length seg7
1002 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
31
Length seg8
865 (98.6%)
Total inserted nucs seg8
14
Total SNPs seg8
35
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
G
66
A
A
90
C
A
108
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
285
A
A
291
G
C
309
T
T
336
G
G
363
A
A
441
G
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
A
233
G
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
T
228
C
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
Show more
seg6
A
160
C
C
301
T
T
323
C
C
452
A
C
509
T
T
512
C
G
607
A
A
785
G
T
799
C
A
818
G
C
893
T
G
905
A
G
914
T
A
1034
G
A
1049
G
C
1187
T
A
1193
G
T
1195
C
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
G
264
A
A
293
G
A
294
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
Show more
seg8
C
6
A
C
42
T
C
54
T
G
60
A
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
Show more
Deletions
N/A
Insertions
seg1
ins_0:TCAAATATATTCAAT, ins_2280:TGTCGAATTGTTTAAAAACGA
seg5
ins_0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATACC
seg7
ins_0:TAGATATTAAAG, ins_982:AAAACTAC
seg8
ins_0:GTGACAAAAACATA
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
V
152
I
HA1:
G
155
E
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
NA
NA:
K
51
T
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
I
396
T
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
E
67
G
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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