GS_00JPT8U.1

India/GS_00JPT8U.1/2026-07-15
S. Karade & R. Ranjan

Army Hospital Research and Referral, Viral Research and Diagnostic Laboratory

Submission details

Submission ID
PZ899155.1.seg1/PZ899154.1.seg3/PZ899149.1.seg4/PZ899152.1.seg5/PZ899151.1.seg6/PZ899150.1.seg7/PZ899153.1.seg8
Submitting group
Date submitted
2026-09-29 07:39:53 UTC
Date released
2026-09-29 07:40:21 UTC

Clade

Clade HA
D.3.1
Clade NA
D.1

Sample details

Collection country
India
Collection subdivision level 1
Delhi
Collection date
2026-07-15
Isolate name
A/Delhi/A-AHRR-02-2026/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-27

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg1
2316 (100%)
Total inserted nucs seg1
36
Total SNPs seg1
69
Length seg3
2192 (100%)
Total inserted nucs seg3
41
Total SNPs seg3
57
Length seg4
1752 (100%)
Total SNPs seg4
119
Length seg5
1541 (100%)
Total inserted nucs seg5
44
Total SNPs seg5
63
Length seg6
1432 (99.9%)
Total SNPs seg6
23
Length seg7
1002 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
30
Length seg8
865 (98.6%)
Total inserted nucs seg8
14
Total SNPs seg8
36

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • A18G
  • G66A
  • A90C
  • A96G
  • A108G
  • A132G
  • A138G
  • G161A
  • A225G
  • A226T
  • A243G
  • C261T
  • A291G
  • C309T
  • T336G
  • G363A
  • G375A
  • A441C

seg3

  • G40A
  • R53A
  • T81C
  • A88G
  • C90T
  • C99T
  • A114T
  • C153T
  • C162T
  • C165T
  • G204A
  • T279C
  • G298A
  • G423A
  • G477A
  • C486A
  • G504A
  • G597A

seg4

  • A38G
  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • G210T
  • A231C
  • A233G
  • C281A
  • C293G
  • C318T
  • G322A
  • G360A
  • G409A
  • G416A

seg5

  • A33G
  • G42T
  • C87T
  • A97G
  • C141A
  • C171T
  • T177C
  • C180T
  • T228C
  • C249A
  • A288C
  • G298A
  • C303T
  • T314C
  • G315A
  • R341A
  • T365A
  • A390G

seg6

  • A160C
  • A219C
  • C301T
  • T323C
  • C452A
  • T512C
  • G607A
  • A785G
  • T799C
  • A818G
  • C893T
  • G905A
  • G914T
  • A1034G
  • A1049G
  • C1187T
  • A1193G
  • T1195C

seg7

  • G48A
  • G75A
  • T123C
  • C124A
  • G238A
  • G258A
  • G264A
  • A293G
  • G306A
  • G339A
  • G342A
  • C375A
  • T432C
  • G441T
  • G492A
  • C507A
  • A574G
  • C622A

seg8

  • C6A
  • C42T
  • C54T
  • G60A
  • T99C
  • C108A
  • T159C
  • G163A
  • C192T
  • C204T
  • A238G
  • G250A
  • C264T
  • C268A
  • C315T
  • A367G
  • A375T
  • A391G
Deletions
N/A
Insertions

seg1

ins_0:TCAAATATATTCAAT, ins_2280:TGTCGAATTGTTTAAAAACGA

seg3

ins_0:CAAA, ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATACTGTCCA

seg5

ins_0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATACC

seg7

ins_0:TAGATGTTAAAG, ins_982:AAAACTAC

seg8

ins_0:GTGACAAAAACATA

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:V47L
  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139N
  • HA1:K142R
  • HA1:V152I
  • HA1:G155E
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

M2

  • M2:R18K
  • M2:D21G
  • M2:S23N

NA

  • NA:K51T
  • NA:N71H
  • NA:A98V
  • NA:S200N
  • NA:I264T
  • NA:I396T
  • NA:V453M
  • NA:K469N

NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:S60N
  • NEP:E67G
  • NEP:M83I

NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I
  • NP:S498N

NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:N205S

PA

  • PA:V14I
  • PA:X18E
  • PA:I30V
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V

PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:I30V
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:N204S
  • PA-X:R206K
  • PA-X:R221Q

PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:S453T
  • PB2:L475M
  • PB2:V667I

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A