GS_00JPT7W.1

India/GS_00JPT7W.1/2026-07-09
S. Karade & R. Ranjan

Army Hospital Research and Referral, Viral Research and Diagnostic Laboratory

Submission details

Submission ID
PZ869220.1.seg1/PZ869219.1.seg2/PZ869218.1.seg3/PZ869213.1.seg4/PZ869216.1.seg5/PZ869215.1.seg6/PZ869214.1.seg7/PZ869217.1.seg8
Submitting group
Date submitted
2026-09-29 07:39:53 UTC
Date released
2026-09-29 07:40:21 UTC

Clade

Clade HA
D.3.1
Clade NA
D.1

Sample details

Collection country
India
Collection subdivision level 1
Delhi
Collection date
2026-07-09
Isolate name
A/Delhi/A-AHRR-01-2026/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-27

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg1
2316 (100%)
Total inserted nucs seg1
36
Total SNPs seg1
81
Length seg2
2317 (100%)
Total inserted nucs seg2
43
Total SNPs seg2
55
Length seg3
2192 (100%)
Total inserted nucs seg3
41
Total SNPs seg3
57
Length seg4
1752 (100%)
Total SNPs seg4
118
Length seg5
1541 (100%)
Total inserted nucs seg5
44
Total SNPs seg5
64
Length seg6
1432 (99.9%)
Total SNPs seg6
22
Length seg7
1002 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
32
Length seg8
865 (98.6%)
Total inserted nucs seg8
14
Total SNPs seg8
35

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • A18G
  • G66A
  • A90C
  • A96G
  • A108G
  • A132G
  • A138G
  • G161A
  • A174G
  • T201C
  • A225G
  • A226T
  • C242T
  • A243G
  • C261T
  • C285A
  • A291G
  • C309T

seg2

  • G168A
  • C192T
  • T222C
  • G225A
  • T324A
  • G354A
  • A366G
  • A510G
  • G598A
  • A630G
  • G678A
  • C684T
  • C844T
  • G924A
  • G960A
  • C999T
  • G1056A
  • A1090C

seg3

  • G40A
  • R53A
  • A88G
  • C90T
  • C99T
  • A114T
  • C153T
  • C162T
  • C165T
  • G187A
  • G204A
  • T257C
  • G298A
  • G423A
  • G477A
  • G498A
  • G504A
  • G597A

seg4

  • A38G
  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • A231C
  • A233G
  • C281A
  • C293G
  • C318T
  • G322A
  • G360A
  • G409A
  • G416A
  • A429G

seg5

  • A33G
  • G42T
  • C87T
  • A97G
  • C141A
  • A165G
  • C171T
  • T177C
  • C180T
  • T228C
  • C249A
  • A288C
  • G298A
  • C303T
  • G309A
  • G315A
  • R341A
  • T365A

seg6

  • A160C
  • C301T
  • T323C
  • C452A
  • T512C
  • G607A
  • A785G
  • T799C
  • A818G
  • C893T
  • G905A
  • G914T
  • A1034G
  • A1049G
  • C1187T
  • A1193G
  • T1195C
  • A1208G

seg7

  • G48A
  • G75A
  • T123C
  • C124A
  • G238A
  • G258A
  • G264A
  • G270T
  • A293G
  • G306A
  • G339A
  • G342A
  • C375A
  • G424T
  • T432C
  • G441T
  • G492A
  • C507A

seg8

  • C6A
  • C42T
  • C54T
  • G60A
  • T99C
  • C108A
  • T159C
  • G163A
  • C192T
  • C204T
  • A238G
  • G250A
  • C264T
  • C268A
  • C315T
  • A367G
  • A375T
  • A391G
Deletions
N/A
Insertions

seg1

ins_0:TCAAATATATTCAAT, ins_2280:TGTCGAATTGTTTAAAAACGA

seg2

ins_0:CAAACCATTTGA, ins_2274:TGAATTTAACTTGTCCTTCATGAAAAAATGC

seg3

ins_0:CAAA, ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATACTGTCCA

seg5

ins_0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATACC

seg7

ins_0:TAGATATTAAAG, ins_982:AAAACTAC

seg8

ins_0:GTGACAAAAACATA

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139N
  • HA1:K142R
  • HA1:V152I
  • HA1:G155E
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:A142S
  • M1:M192V
  • M1:Q208K
  • M1:K230R

M2

  • M2:R18K
  • M2:D21G
  • M2:S23N

NA

  • NA:K51T
  • NA:A98V
  • NA:S200N
  • NA:I264T
  • NA:I396T
  • NA:V453M
  • NA:K469N

NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:E67G
  • NEP:M83I

NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105I
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I
  • NP:S498N

NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:N205S

PA

  • PA:V14I
  • PA:X18E
  • PA:I30V
  • PA:V63I
  • PA:M86T
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V

PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:M86T
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:N204S
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

PB1

  • PB1:V200I
  • PB1:I364L
  • PB1:I397M
  • PB1:I435T
  • PB1:P454S
  • PB1:Q584K
  • PB1:V640L
  • PB1:D729E
  • PB1:K757R

PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:T81M
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A