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GS_00JP6U8.1
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Download FASTA
Download metadata TSV
USA/GS_00JP6U8.1/2026-09-09
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Girinathan,
H. Mammadova,
P. Leeson &
D. Gratalo
Perimeter
Submission details
Submission ID
QB045890.1.seg1/QB045889.1.seg2/QB045891.1.seg4/QB045888.1.seg5/QB045892.1.seg6/QB045887.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 08:10:27 UTC
Date released
2026-09-25 08:10:45 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg1
QB045890.1
INSDC accession seg2
QB045889.1
INSDC accession seg4
QB045891.1
INSDC accession seg5
QB045888.1
INSDC accession seg6
QB045892.1
INSDC accession seg7
QB045887.1
NCBI release date
2026-09-22
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-09-09
Isolate name
A/New York/GKISBBBJ97699/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2318 (99%)
Total SNPs seg1
109
Length seg2
2320 (99.1%)
Total SNPs seg2
110
Length seg4
1737 (100%)
Total SNPs seg4
122
Length seg5
1542 (98.4%)
Total inserted nucs seg5
1
Total SNPs seg5
62
Length seg6
1395 (95.9%)
Total SNPs seg6
23
Total unknown nucs seg6
15
Length seg7
1004 (97.8%)
Total SNPs seg7
29
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
G
51
A
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
G
272
A
A
282
G
C
289
A
A
336
G
G
342
T
G
343
A
G
347
A
A
369
G
G
375
A
Show more
seg2
A
45
G
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
G
180
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
A
342
T
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
A
16
G
C
29
T
A
40
T
G
81
A
G
96
A
G
207
A
G
219
A
C
249
T
G
270
A
G
338
A
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
Show more
seg6
C
40
T
A
64
G
T
100
C
T
103
C
G
251
A
T
325
C
C
349
A
G
456
A
C
575
T
A
603
C
C
797
A
C
832
A
T
1015
C
A
1044
G
A
1047
G
A
1079
G
A
1160
G
A
1167
C
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
T
316
C
G
343
A
A
448
G
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
G
616
A
A
637
G
A
658
G
Show more
Deletions
N/A
Insertions
seg5
ins_1544:A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
A
82
T
NA:
R
150
H
NA:
K
199
T
NA:
H
264
N
NA:
D
346
G
NA:
H
347
R
NA:
N
358
D
NA:
N
385
D
NA:
K
387
T
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
R
98
K
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
R
400
K
NP:
E
421
D
NP:
T
472
A
PB1
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
K
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
S
82
N
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
T
184
S
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
PB2:
R
703
K
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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