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Influenza A/H3N2
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GS_00JP6TA.1
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Download FASTA
Download metadata TSV
USA/GS_00JP6TA.1/2026-09-06
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Girinathan,
H. Mammadova,
P. Leeson &
D. Gratalo
Perimeter
Submission details
Submission ID
QB045878.1.seg1/QB045877.1.seg2/QB045879.1.seg4/QB045875.1.seg5/QB045880.1.seg6/QB045874.1.seg7/QB045876.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 08:10:27 UTC
Date released
2026-09-25 08:10:45 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg1
QB045878.1
INSDC accession seg2
QB045877.1
INSDC accession seg4
QB045879.1
INSDC accession seg5
QB045875.1
INSDC accession seg6
QB045880.1
INSDC accession seg7
QB045874.1
INSDC accession seg8
QB045876.1
NCBI release date
2026-09-22
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2026-09-06
Isolate name
A/Virginia/GKISBBBK12961/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2310 (98.7%)
Total SNPs seg1
107
Length seg2
2317 (99%)
Total SNPs seg2
111
Length seg4
1737 (100%)
Total SNPs seg4
122
Length seg5
1541 (98.4%)
Total SNPs seg5
60
Length seg6
1413 (98.2%)
Total SNPs seg6
21
Length seg7
1002 (97.6%)
Total SNPs seg7
29
Length seg8
865 (97.2%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
G
51
A
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
G
272
A
A
282
G
C
289
A
A
336
G
G
342
T
G
343
A
G
347
A
A
369
G
G
375
A
Show more
seg2
A
45
G
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
G
180
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
A
342
T
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
A
16
G
C
29
T
A
40
T
G
81
A
G
96
A
G
207
A
G
219
A
C
249
T
G
270
A
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
Show more
seg6
C
40
T
A
64
G
T
100
C
G
251
A
T
325
C
C
349
A
G
456
A
C
575
T
A
603
C
C
797
A
C
832
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
A
1167
C
G
1206
A
C
1249
A
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
T
316
C
G
343
A
A
448
G
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
G
616
A
A
637
G
A
658
G
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
G
430
A
A
442
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
A
82
T
NA:
R
150
H
NA:
K
199
T
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
K
387
T
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PB1
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
K
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
S
82
N
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
T
184
S
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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