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GS_00JP6RE.1
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USA/GS_00JP6RE.1/2026-08-18
P. Roychoudhury,
B. E. Nunley,
R. Bakker,
S. E. Ellis &
A. Greninger
University of Washington Virology Lab, Laboratory Medicine and Pathology
Submission details
Submission ID
QB045427.1.seg3/QB045428.1.seg4/QB045429.1.seg5/QB045430.1.seg6/QB045431.1.seg7/QB045432.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 08:10:27 UTC
Date released
2026-09-25 08:10:45 UTC
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-08-18
Isolate name
A/Washington/WA-UW-99485/2026
INSDC
INSDC accession seg3
QB045427.1
INSDC accession seg4
QB045428.1
INSDC accession seg5
QB045429.1
INSDC accession seg6
QB045430.1
INSDC accession seg7
QB045431.1
INSDC accession seg8
QB045432.1
NCBI release date
2026-09-22
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg3
2206 (97.5%)
Total SNPs seg3
94
Total unknown nucs seg3
28
Length seg4
1737 (100%)
Total SNPs seg4
127
Length seg5
1541 (98.4%)
Total SNPs seg5
60
Length seg6
1441 (100%)
Total deleted nucs seg6
1
Total inserted nucs seg6
3
Total SNPs seg6
19
Length seg7
1002 (97.6%)
Total SNPs seg7
28
Length seg8
865 (97.2%)
Total SNPs seg8
32
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg3
G
22
A
A
61
G
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
248
G
Show more
seg5
A
16
G
C
29
T
A
40
C
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
A
387
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
Show more
seg6
C
40
T
A
64
G
T
100
C
A
183
G
C
349
A
G
456
A
G
517
A
C
797
A
C
994
T
T
1015
C
A
1044
G
A
1079
G
A
1160
G
G
1206
A
C
1270
T
G
1342
A
G
1390
A
A
1410
G
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
208
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
177
A
G
192
T
C
200
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
Show more
Deletions
seg6
1428
Insertions
seg6
ins_1439:ACT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
R
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
Y
52
C
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
E
59
G
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
G
51
S
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
I
13
V
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
459
V
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
I
13
V
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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