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GS_00JP5U9.1
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Download FASTA
Download metadata TSV
USA/GS_00JP5U9.1/2026-09-08
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
QB061324.1.seg4/QB061325.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 08:10:27 UTC
Date released
2026-09-25 08:10:45 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Pennsylvania
Collection date
2026-09-08
Isolate name
A/swine/Pennsylvania/A03690895/2026
INSDC
INSDC accession seg4
QB061324.1
INSDC accession seg6
QB061325.1
NCBI release date
2026-09-24
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total SNPs seg4
198
Length seg6
1410 (98%)
Total SNPs seg6
183
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
C
29
A
G
38
T
A
43
G
A
45
G
T
55
A
G
57
A
T
60
A
T
65
C
G
79
A
A
82
G
A
88
G
A
90
G
C
94
T
G
101
A
C
107
T
C
108
T
T
110
G
G
113
A
Show more
seg6
C
20
A
G
25
A
G
34
A
T
49
C
A
53
G
A
55
C
A
56
C
T
59
G
C
61
T
T
74
C
C
76
T
C
91
T
A
95
G
A
97
G
T
110
C
T
125
C
A
130
T
T
132
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
G
5
E
HA1:
N
6
S
HA1:
N
8
S
HA1:
S
9
G
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
G
50
R
HA1:
D
53
N
HA1:
E
62
K
HA1:
Q
75
H
HA1:
G
78
D
HA1:
K
83
G
HA1:
K
92
T
HA1:
D
101
Y
HA1:
P
103
T
HA1:
S
107
T
HA1:
T
117
N
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HA2
HA2:
I
32
T
HA2:
N
49
T
HA2:
L
55
V
HA2:
G
57
K
HA2:
K
123
R
HA2:
K
124
R
HA2:
V
161
I
HA2:
D
164
N
HA2:
E
177
Q
HA2:
A
201
V
NA
NA:
Q
5
K
NA:
T
16
A
NA:
I
17
L
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
43
D
NA:
P
45
S
NA:
L
52
F
NA:
I
62
K
NA:
T
71
I
NA:
I
73
V
NA:
N
86
I
NA:
G
93
N
NA:
L
126
F
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
I
10
V
SigPep:
L
13
Q
SigPep:
V
14
I
SigPep:
F
15
I
Deletions
N/A
Insertions
N/A
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