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Influenza A/H1N1pdm
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GS_00JP5RF.1
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USA/GS_00JP5RF.1/2026-09-08
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
QB061320.1.seg4/QB061321.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 07:39:52 UTC
Date released
2026-09-25 07:40:39 UTC
Clade
Clade HA
D
Clade NA
C.5.1.1
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-09-08
Isolate name
A/swine/Iowa/A03690893/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
QB061320.1
INSDC accession seg6
QB061321.1
NCBI release date
2026-09-24
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1701 (97.1%)
Total SNPs seg4
113
Length seg6
1410 (98.3%)
Total ambiguous nucs seg6
1
Total SNPs seg6
27
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
C
42
A
A
47
G
T
56
C
G
57
A
T
161
C
C
164
T
G
188
A
G
228
A
A
231
C
T
236
C
C
248
T
C
255
T
G
292
A
C
293
A
T
294
G
C
318
T
G
322
A
G
360
A
Show more
seg6
C
43
A
C
47
T
A
156
G
C
223
T
C
275
T
T
335
C
T
353
C
C
452
A
C
569
T
C
773
T
A
785
G
A
818
G
C
893
T
G
905
T
G
914
T
G
1025
A
G
1153
A
A
1164
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
G
53
S
HA1:
K
54
Q
HA1:
S
74
K
HA1:
S
75
A
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
N
129
D
HA1:
P
137
S
HA1:
N
156
Q
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
M
HA1:
A
186
T
HA1:
Q
189
E
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
K
116
E
HA2:
E
120
A
HA2:
S
124
H
HA2:
E
172
K
HA2:
E
179
D
NA
NA:
S
12
Y
NA:
N
50
D
NA:
T
72
I
NA:
G
382
E
NA:
K
386
E
NA:
E
432
K
NA:
V
453
M
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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