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Influenza A/H1N1pdm
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Influenza A/H1N1pdm
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Influenza A/H1N1pdm
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GS_00JP4TC.1
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Download FASTA
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USA/GS_00JP4TC.1/2026-08-19
P. Roychoudhury,
B. E. Nunley,
R. Bakker,
S. E. Ellis &
A. Greninger
University of Washington Virology Lab, Laboratory Medicine and Pathology
Submission details
Submission ID
QB045439.1.seg2/QB045438.1.seg3/QB045433.1.seg4/QB045436.1.seg5/QB045435.1.seg6/QB045434.1.seg7/QB045437.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 07:39:52 UTC
Date released
2026-09-25 07:40:39 UTC
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-08-19
Isolate name
A/Washington/WA-UW-36351/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg2
QB045439.1
INSDC accession seg3
QB045438.1
INSDC accession seg4
QB045433.1
INSDC accession seg5
QB045436.1
INSDC accession seg6
QB045435.1
INSDC accession seg7
QB045434.1
INSDC accession seg8
QB045437.1
NCBI release date
2026-09-22
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg2
2274 (90.5%)
Total SNPs seg2
71
Total unknown nucs seg2
215
Length seg3
837 (38.9%)
Total SNPs seg3
37
Length seg4
1043 (59.5%)
Total SNPs seg4
69
Length seg5
1497 (100%)
Total SNPs seg5
61
Length seg6
1410 (98.4%)
Total SNPs seg6
27
Length seg7
982 (100%)
Total SNPs seg7
31
Length seg8
863 (100%)
Total SNPs seg8
33
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg2
T
18
C
C
27
T
G
42
A
A
159
G
G
168
A
G
180
A
C
192
T
C
201
T
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
T
307
C
G
312
A
T
324
A
G
354
A
A
366
G
Show more
seg3
A
1318
G
T
1338
C
C
1410
T
C
1449
T
T
1467
C
G
1470
A
C
1473
A
A
1513
G
A
1518
G
G
1524
A
T
1545
C
G
1551
A
C
1587
T
G
1590
A
G
1599
A
C
1647
A
G
1653
A
C
1665
T
Show more
seg4
A
717
G
T
718
C
C
738
A
G
739
A
A
742
C
G
776
A
A
809
T
T
820
C
A
827
G
G
837
A
G
847
A
A
849
G
T
851
A
A
900
G
A
911
G
G
950
A
A
954
G
A
968
G
Show more
seg5
G
42
T
G
54
A
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
A
33
G
T
68
C
A
225
C
C
301
T
T
347
C
C
401
T
C
452
A
C
572
A
G
607
A
A
785
G
G
788
A
T
799
C
A
818
G
G
881
T
C
893
T
G
905
T
G
914
T
G
950
T
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
660
A
Show more
seg8
C
6
A
C
42
T
C
54
T
G
60
A
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
I
216
A
HA1:
R
223
K
HA1:
E
224
A
HA1:
V
250
A
HA1:
A
256
T
HA1:
R
259
K
HA1:
N
260
E
HA1:
T
277
A
HA1:
I
295
V
HA1:
K
302
E
HA1:
K
308
R
HA1:
I
321
V
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
T
9
A
NA:
N
73
H
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NA:
G
454
D
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
S
440
G
PA:
I
505
V
PB1
PB1:
F
103
L
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
D
729
E
PB1:
K
757
R
Deletions
N/A
Insertions
N/A
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