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Influenza A/H1N1pdm
GenSpectrum
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Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza B
Influenza B/Victoria
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Influenza A/H1N1pdm
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GS_00JP4F3.1
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USA/GS_00JP4F3.1/2026-08-31
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Girinathan,
H. Mammadova,
P. Leeson &
D. Gratalo
Perimeter
Submission details
Submission ID
QB010005.1.seg4/QB010004.1.seg5/QB010006.1.seg6/QB010003.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-25 07:39:52 UTC
Date released
2026-09-25 07:40:39 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg4
QB010005.1
INSDC accession seg5
QB010004.1
INSDC accession seg6
QB010006.1
INSDC accession seg7
QB010003.1
NCBI release date
2026-09-15
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-08-31
Isolate name
A/California/GKISBBBK85472/2026
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1735 (99%)
Total SNPs seg4
118
Length seg5
1540 (100%)
Total inserted nucs seg5
43
Total SNPs seg5
64
Length seg6
1417 (98.9%)
Total SNPs seg6
23
Length seg7
1002 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
31
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
A
233
G
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
T
228
C
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
Show more
seg6
A
160
C
C
301
T
T
323
C
C
452
A
T
512
C
G
607
A
A
785
G
T
799
C
A
818
G
C
893
T
G
905
A
G
914
T
C
989
T
A
1034
G
A
1049
G
C
1187
T
A
1193
G
T
1195
C
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
G
264
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
Show more
Deletions
N/A
Insertions
seg5
ins_0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATAC
seg7
ins_0:TAGATGTTTAAAG, ins_982:AAAACTA
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
V
152
I
HA1:
G
155
E
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
NA
NA:
K
51
T
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
I
396
T
NA:
V
453
M
NA:
K
469
N
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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