GS_00JP43T.1

USA/GS_00JP43T.1/2026-09-08
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
QB045872.1.seg1/QB045873.1.seg2/QB045871.1.seg3/QB045866.1.seg4/QB045869.1.seg5/QB045868.1.seg6/QB045867.1.seg7/QB045870.1.seg8
Submitting group
Date submitted
2026-09-25 05:01:39 UTC
Date released
2026-09-25 05:02:21 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-22

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-09-08
Isolate name
B/California/GKISBBBK88283/2026

Host

Host

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2342 (100%)
Total inserted nucs seg1
8
Total SNPs seg1
47
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
57
Length seg3
2274 (100%)
Total inserted nucs seg3
29
Total SNPs seg3
53
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
61
Length seg5
1809 (100%)
Total inserted nucs seg5
59
Total SNPs seg5
37
Length seg6
1525 (100%)
Total inserted nucs seg6
124
Total SNPs seg6
38
Length seg7
1149 (100%)
Total inserted nucs seg7
2
Total SNPs seg7
15
Length seg8
1062 (99.5%)
Total inserted nucs seg8
1
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C26T
  • C113T
  • G197A
  • A200G
  • A359G
  • G383A
  • C434T
  • T522C
  • A671G
  • C746A
  • A827G
  • C854T
  • T938C
  • A950G
  • T962C
  • T968C
  • T995C
  • G1064A

seg2

  • G12A
  • G39A
  • G46A
  • A54G
  • G81A
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A594G

seg3

  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C773A
  • C813T
  • A828G
  • G867A
  • C897T
  • G906A
  • A935G
  • G936A

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T

seg5

  • C3T
  • T46C
  • A55G
  • A121G
  • C178T
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • G370T
  • A373G
  • C380T
  • A454G
  • C523T
  • T532C
  • T534C

seg6

  • T9C
  • C125A
  • T134C
  • G194A
  • T212C
  • C217T
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • A660C
  • T714A
  • C849T
  • A853G
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • A919G
  • A967G

seg8

  • G6A
  • G27A
  • A118G
  • T163C
  • T166C
  • G190A
  • G313A
  • T341C
  • A352C
  • T355C
  • C358A
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:G

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAA

seg5

ins_0:ATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATA

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTATTTCTGAAA

seg7

ins_0:A, ins_1147:A

seg8

ins_25:A

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:L73F
  • NA:I120V
  • NA:K220N
  • NA:K285E
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:G346R
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:I169T
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

PA

  • PA:T258K
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:V474I

PB2

  • PB2:D15N
  • PB2:X303I
  • PB2:I492T
  • PB2:V512A
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A