GS_00JP3V9.1

USA/GS_00JP3V9.1/2026-09-01
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
QB009972.1.seg4/QB009973.1.seg8
Submitting group
Date submitted
2026-09-25 05:01:39 UTC
Date released
2026-09-25 05:02:21 UTC

INSDC

bioprojectAccession
INSDC accession seg4
INSDC accession seg8
NCBI release date
2026-09-15

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-09-01
Isolate name
B/New York/GKISBBBJ50919/2026

Host

Host

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg4
1780 (94.9%)
Total deleted nucs seg4
9
Total SNPs seg4
59
Length seg8
1051 (98.6%)
Total SNPs seg8
20

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T
  • A484G

seg8

  • G26A
  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T355C
  • G376A
  • T391C
  • C419T
  • C572A
  • T596C
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
  • C882T
  • A950G
  • T963C
Deletions

seg4

562-570
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

NEP

  • NEP:L30S
  • NEP:S93P

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:R181S
  • NS1:H201Y
Deletions

HA1

HA1:162-164
Insertions
N/A